Browse Element(s) Details


Os.17828.1.S1_s_at

Description gb:AK069173.1
DB_XREF= gi:32979197
TID=Os.17828.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.17828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1626B05.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007A11, full insert sequence.
FL= gb:AK069173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17828.1.S1_s_at--373--7171Chr03:6632338..6632362 (25 bp)
GTCTCCTGATTTTCCAGTGCAGTAC
LOC_Os03g12550
Os.17828.1.S1_s_at--890--1171Chr03:6632358..6632382 (25 bp)
AGTACAGCAATGTTCATCACTTCCC
LOC_Os03g12550
Os.17828.1.S1_s_at--25--9051Chr03:6632389..6632413 (25 bp)
TGCTTTTAGTTATGCTCCTCCGGAG
LOC_Os03g12550
Os.17828.1.S1_s_at--756--5871Chr03:6632411..6632435 (25 bp)
GAGCCGATTCGGAAGACCACGCCAA
LOC_Os03g12550
Os.17828.1.S1_s_at--930--4391Chr03:6632431..6632455 (25 bp)
GCCAAGCTTCAGAGTCATGCATACA
LOC_Os03g12550
Os.17828.1.S1_s_at--747--511Chr03:6632455..6632479 (25 bp)
ATCGCCGCCTTACCGAAATGGATTG
LOC_Os03g12550
Os.17828.1.S1_s_at--61--1351Chr03:6632484..6632508 (25 bp)
AGAGTCAAACTGTTGGCCATCCTCA
LOC_Os03g12550
Os.17828.1.S1_s_at--512--1371Chr03:6632512..6632536 (25 bp)
AGACCCGACTCTAGAAAGGCATCCT
LOC_Os03g12550
Os.17828.1.S1_s_at--1158--6671Chr03:6632617..6632641 (25 bp)
GTTCCAATTCAACCTGCCAATAGCT
LOC_Os03g12550
Os.17828.1.S1_s_at--617--2551Chr03:6632695..6632719 (25 bp)
AACGCCGTTGGCTCAGGTTCAAGTT
LOC_Os03g12550
Os.17828.1.S1_s_at--888--3351Chr03:6632818..6632842 (25 bp)
CACGCGGGAGATCTGTACTGTTGTT
LOC_Os03g12550
Target Sequence 
GTCTCCTGATTTTCCAGTGCAGTACAGCAATGTTCATCACTTCCCAGCTCCTGCTTTTAGTTATGCTCCTCCGGAGCCGA
TTCGGAAGACCACGCCAAGCTTCAGAGTCATGCATACATCGCCGCCTTACCGAAATGGATTGCATCAGAGTCAAACTGTT
GGCCATCCTCATGGAGACCCGACTCTAGAAAGGCATCCTTCTCAGCCTAAGCCGTTGGACCTGAAGGATGCTCCAGGAGA
GAACAAAAGCTCGCCTGAGGGGAATGCATCCTTCTCGTTGTTCCAATTCAACCTGCCAATAGCTCCCCCTGCCCCACCAT
CATCCAAAGATGACACGAGTGGAGAGTCAGCTACAAGAACGCCGTTGGCTCAGGTTCAAGTTCAGCCTTGCTCGAGGGAG
CAGACTGATGTCAAAGAATACAATCTGTTTTGCTCGAAAAATGGCAGCATGTTTTCATTTATATCGAGATAAAAGCAACA
CACGCGGGAGATCTGTACTGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17828.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis