Browse Element(s) Details


OsAffx.22279.1.S1_at

Description gb:NM_187617.1
DB_XREF= gi:34902319
TID=OsAffx.22279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OJ1626B05.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1258011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os03g12580OsAffx.22279.1.S1_at11/113+6653353..6654586retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12590Os.10603.1.S1_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12590Os.43914.1.S1_x_at11/113+6655525..6662942Adaptin N terminal region family protein, expressed
LOC_Os03g12600OsAffx.32166.1218.S1_x_at5/113+6666205..6674361retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22279.1.S1_at--424--7511Chr03:6653426..6653450 (25 bp)
GTGGACCTTGGCCGCACGAACCCAA
LOC_Os03g12580
OsAffx.22279.1.S1_at--261--6111Chr03:6654310..6654334 (25 bp)
GAGTGCCACCACTCGGGACGGCGTG
LOC_Os03g12580
OsAffx.22279.1.S1_at--23--8371Chr03:6654329..6654353 (25 bp)
GGCGTGTCCGTGAACTTCGACACGC
LOC_Os03g12580
OsAffx.22279.1.S1_at--1069--5631Chr03:6654347..6654371 (25 bp)
GACACGCCGCAGTTCGTCAGCGATG
LOC_Os03g12580
OsAffx.22279.1.S1_at--306--1831Chr03:6654350..6654374 (25 bp)
ACGCCGCAGTTCGTCAGCGATGGCG
LOC_Os03g12580
OsAffx.22279.1.S1_at--169--971Chr03:6654378..6654402 (25 bp)
AGGACCACCTTCGTGTTGGAGCGAG
LOC_Os03g12580
OsAffx.22279.1.S1_at--471--1711Chr03:6654381..6654405 (25 bp)
ACCACCTTCGTGTTGGAGCGAGGCG
LOC_Os03g12580
OsAffx.22279.1.S1_at--778--7331Chr03:6654406..6654430 (25 bp)
GTGCAGCGAGGCTACTCCTGTGTCG
LOC_Os03g12580
OsAffx.22279.1.S1_at--1016--4031Chr03:6654412..6654436 (25 bp)
CGAGGCTACTCCTGTGTCGGCCAGG
LOC_Os03g12580
OsAffx.22279.1.S1_at--718--3471Chr03:6654433..6654457 (25 bp)
CAGGGTCCGAGCTAGCCGAGCCGCT
LOC_Os03g12580
OsAffx.22279.1.S1_at--912--10051Chr03:6654493..6654517 (25 bp)
TAGGCGGCCGCAGGGCGTCTGGGCG
LOC_Os03g12580
Target Sequence 
GTGGACCTTGGCCGCACGAACCCAACGGCGGCGACGGCGCGAGTGCCACCACTCGGGACGGCGTGTCCGTGAACTTCGAC
ACGCCGCAGTTCGTCAGCGATGGCGGGGAGGACCACCTTCGTGTTGGAGCGAGGCGGTGCAGCGAGGCTACTCCTGTGTC
GGCCAGGGTCCGAGCTAGCCGAGCCGCTGCCGACGGTGGAGGGGACCTGTTCCATGACCTCCCTAGGCGGCCGCAGGGCG
TCTGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis