Browse Element(s) Details


Os.7678.1.S1_at

Description gb:AY310358.1
DB_XREF= gi:32351268
TID=Os.7678.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7678 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) allene oxide synthase mRNA, complete cds.
PROD=allene oxide synthase
FL= gb:AY055775.1 gb:AY310358.1 gb:AK061758.1 gb:AK066138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1250011/11Cytochrome P450 74A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0019373biological_processepoxygenase P450 pathway
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009978molecular_functionallene oxide synthase activity
GO:0016836molecular_functionhydro-lyase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7678.1.S1_at--611--5831Chr03:6589016..6589040 (25 bp)
GACCTGGAGATCGAGAGCCACGACG
LOC_Os03g12500
Os.7678.1.S1_at--740--6191Chr03:6589165..6589189 (25 bp)
GAGGAAGCTGCTGCAATACGTGTAC
LOC_Os03g12500
Os.7678.1.S1_at--781--311Chr03:6589180..6589204 (25 bp)
ATACGTGTACTGGTCGAATGGGCGA
LOC_Os03g12500
Os.7678.1.S1_at--152--1331Chr03:6589204..6589228 (25 bp)
AGAGACGGAGAACCCTAGCGTTGAC
LOC_Os03g12500
Os.7678.1.S1_at--406--9991Chr03:6589219..6589243 (25 bp)
TAGCGTTGACAACAAGCAGTGCCCC
LOC_Os03g12500
Os.7678.1.S1_at--803--9091Chr03:6589260..6589284 (25 bp)
TGCTCGTCGGAAGGCTGTTGCTCGT
LOC_Os03g12500
Os.7678.1.S1_at--66--9311Chr03:6589367..6589391 (25 bp)
TCCGCCGTCAATCGTACTGCTTAAG
LOC_Os03g12500
Os.7678.1.S1_at--50--2671Chr03:6589389..6589413 (25 bp)
AAGCCGGCCATCACTTCAGGCGTGG
LOC_Os03g12500
Os.7678.1.S1_at--659--9631Chr03:6589404..6589428 (25 bp)
TCAGGCGTGGGTCGTCGATCATCCA
LOC_Os03g12500
Os.7678.1.S1_at--468--1591Chr03:6589436..6589460 (25 bp)
AGCTCCGTCCTACGCATATGCAATA
LOC_Os03g12500
Os.7678.1.S1_at--1051--5571Chr03:6589462..6589486 (25 bp)
GAAATACTCGTACCTGAATTCTTGC
LOC_Os03g12500
Target Sequence 
GACCTGGAGATCGAGAGCCACGACGCGTCGTTCGCGATCAAGAAGGGGGAGATGCTGTTCGGCTACCAGCCGTGCGCCAC
CAGGGACCCGCGGGTGTTCGGCGCCACGGCGAGGGAGTTCGTCGGCGACCGGTTCGTCGGCGAGGAGGGGAGGAAGCTGC
TGCAATACGTGTACTGGTCGAATGGGCGAGAGACGGAGAACCCTAGCGTTGACAACAAGCAGTGCCCCGGCAAGAACCTG
GTGGTGCTCGTCGGAAGGCTGTTGCTCGTCGAGCTCTTCCTCCGGTACGACACCTTCACCGCCGAGGCCGGCAAAAAGGT
GGTCATCACCGGGGTCACCAAAGCTTCAACCTCCGCCGTCAATCGTACTGCTTAAGCCGGCCATCACTTCAGGCGTGGGT
CGTCGATCATCCACTCAACCAGCTCCGTCCTACGCATATGCAATAAGAAATACTCGTACCTGAATTCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis