Browse Element(s) Details


Os.15503.1.A1_at

Description gb:AK058500.1
DB_XREF= gi:32968518
TID=Os.15503.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-016-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F03, full insert sequence.
FL= gb:AK058500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1246010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15503.1.A1_at--1081--10751Chr03:6566523..6566547 (25 bp)
TTGAGCAGCTGCAGGTACCAAGGTT
LOC_Os03g12460
Os.15503.1.A1_at--662--3211Chr03:6566541..6566565 (25 bp)
CAAGGTTGCGTTCTGATGCATGCTA
LOC_Os03g12460
Os.15503.1.A1_at--150--9051Chr03:6566557..6566581 (25 bp)
TGCATGCTATGGTTTGGCTAGAGCT
LOC_Os03g12460
Os.15503.1.A1_at--839--8351Chr03:6566584..6566608 (25 bp)
GGCGGAAGCTTATGAACTGATCTAT
LOC_Os03g12460
Os.15503.1.A1_at--930--1451Chr03:6566628..6566652 (25 bp)
AGAATTGCTACCCTGACCCAAGGTC
LOC_Os03g12460
Os.15503.1.A1_at--346--7151Chr03:6566650..6566674 (25 bp)
GTCTTTAGTAAAACACTCGCCTGAG
LOC_Os03g12460
Os.15503.1.A1_at--824--7811Chr03:6566702..6566726 (25 bp)
GGTCTATTCACAATCTCTTCATACA
LOC_Os03g12460
Os.15503.1.A1_at--509--6011Chr03:6566734..6566758 (25 bp)
GAGAGAACCCTTTTATAGAGTCAAT
LOC_Os03g12460
Os.15503.1.A1_at--142--6651Chr03:6566815..6566839 (25 bp)
GTTGTTTACACCTTCACTGAACTCT
LOC_Os03g12460
Os.15503.1.A1_at--1133--3751Chr03:6566836..6566860 (25 bp)
CTCTTGTATCATAGCGTTTCTCTTG
LOC_Os03g12460
Os.15503.1.A1_at--536--3051Chr03:6566902..6566926 (25 bp)
AATCGTAGTGTTTCTCCTGTATGTC
NONE
Target Sequence 
TTGAGCAGCTGCAGGTACCAAGGTTGCGTTCTGATGCATGCTATGGTTTGGCTAGAGCTNTGGCGGAAGCTTATGAACTG
ATCTATAAGGCAGTGGTGGATCCNAAGAATTGCTACCCTGACCCAAGGTCTTTAGTAAAACACTCGCCTGAGCAGATAAG
GACTATACTAGAAATCTGAGGTCTATTCACAATCTCTTCATACATGTTAATGAGAGAACCCTTTTATAGAGTCAATGTCA
ATGTGGGGTATATTTGCTACGAAAAGGTGTGATTTCAAATTCTTTTACTGAAGTTGTTTACACCTTCACTGAACTCTTGT
ATCATAGCGTTTCTCTTGTATTAATGTTTTTTCTATCTTTGTAAAAGTAAAACTGCTTGAATCGTAGTGTTTCTCCTGTA
TGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15503.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis