Browse Element(s) Details


Os.7298.2.S1_at

Description gb:AK073981.1
DB_XREF= gi:32984004
TID=Os.7298.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0081P02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076C04, full insert sequence.
FL= gb:AK073981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1245010/11Nup133 nucleoporin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7298.2.S1_at--186--5671Chr03:6559503..6559527 (25 bp)
GACATGGACTCTTGATACTGTCACA
LOC_Os03g12450
Os.7298.2.S1_at--991--6471Chr03:6559516..6559540 (25 bp)
GATACTGTCACATTCTGTCAGGGAG
LOC_Os03g12450
Os.7298.2.S1_at--1106--2331Chr03:6559541..6559565 (25 bp)
AAAGACCTGCAGGTTGGGACCTCCA
LOC_Os03g12450
Os.7298.2.S1_at--65--8651Chr03:6559555..6559579 (25 bp)
TGGGACCTCCAAATCTGAAATCAGA
LOC_Os03g12450
Os.7298.2.S1_at--259--10591NONE
TTCTCTTCTTTGCAGCACGGAATGT
NONE
Os.7298.2.S1_at--63--791Chr03:6559608..6559632 (25 bp)
ATGTGTGCAGTTCCAGATGTATTCA
LOC_Os03g12450
Os.7298.2.S1_at--79--6271Chr03:6559623..6559647 (25 bp)
GATGTATTCATATTGCGGGCGAAAC
LOC_Os03g12450
Os.7298.2.S1_at--1106--4651Chr03:6559637..6559661 (25 bp)
GCGGGCGAAACTATTTGTAGAGACT
LOC_Os03g12450
Os.7298.2.S1_at--1112--3211Chr03:6559663..6559687 (25 bp)
CAAGATTTTGTCAGTTCGTGCCCTT
LOC_Os03g12450
Os.7298.2.S1_at--8--9431Chr03:6559678..6559702 (25 bp)
TCGTGCCCTTTTTTAGCATGAGCTG
LOC_Os03g12450
Os.7298.2.S1_at--831--5871Chr03:6559697..6559721 (25 bp)
GAGCTGTGGCTTGAAACGAGTTTTT
LOC_Os03g12450
Target Sequence 
GACATGGACTCTTGATACTGTCACATTCTGTCAGGGAGAAAGACCTGCAGGTTGGGACCTCCAAATCTGAAATCAGAGTC
AATTTTCTCTTCTTTGCAGCACGGAATGTGTGCAGTTCCAGATGTATTCATATTGCGGGCGAAACTATTTGTAGAGACTG
CAAGATTTTGTCAGTTCGTGCCCTTTTTTAGCATGAGCTGTGGCTTGAAACGAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7298.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis