Browse Element(s) Details


Os.7298.3.S1_x_at

Description gb:NM_187605.1
DB_XREF= gi:34902295
GEN=OSJNBa0081P02.13
TID=Os.7298.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7298 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OSJNBa0081P02.13), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1245011/11Nup133 nucleoporin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7298.3.S1_x_at--496--6051Chr03:6558978..6559002 (25 bp)
GAGATTGTTCAGCATGACCCAGAGT
LOC_Os03g12450
Os.7298.3.S1_x_at--6--3111Chr03:6559015..6559039 (25 bp)
AATATACTACCAAGCCATTTCGTCC
LOC_Os03g12450
Os.7298.3.S1_x_at--789--1191Chr03:6559100..6559124 (25 bp)
AGTATTTGCTTGGACGAGGGCCTCG
LOC_Os03g12450
Os.7298.3.S1_x_at--1064--8071Chr03:6559129..6559153 (25 bp)
GGAGCTCCAACAAAGGCCTTCTAGA
LOC_Os03g12450
Os.7298.3.S1_x_at--483--4451Chr03:6559144..6559168 (25 bp)
GCCTTCTAGAGGCTTGCTGGATGAA
LOC_Os03g12450
Os.7298.3.S1_x_at--257--671Chr03:6559164..6559188 (25 bp)
ATGAATGCAGCCGACCAGGACGACT
LOC_Os03g12450
Os.7298.3.S1_x_at--115--971Chr03:6559180..6559204 (25 bp)
AGGACGACTGGGTTAGCCTTCAAGA
LOC_Os03g12450
Os.7298.3.S1_x_at--853--2731Chr03:6559240..6559264 (25 bp)
AAGAATCTCTTCAGGGCACTGTCCT
LOC_Os03g12450
Os.7298.3.S1_x_at--228--6791Chr03:6559285..6559309 (25 bp)
GTTATAGCCCAGACGCCGTGGTGTA
LOC_Os03g12450
Os.7298.3.S1_x_at--48--4751Chr03:6559400..6559424 (25 bp)
GCTGATGCAGCACAAGGATTTCCCT
LOC_Os03g12450
Os.7298.3.S1_x_at--125--2911Chr03:6559413..6559437 (25 bp)
AAGGATTTCCCTGATGCGGGTAAAT
LOC_Os03g12450
Target Sequence 
GAGATTGTTCAGCATGACCCAGAGTATGCACCAGATAAATATACTACCAAGCCATTTCGTCCATTGGAACTGATCGAGAT
GTGCCTGAAGGGAGATCGAGAGCTCTCTCTTAAAGCTTTTGAAGTATTTGCTTGGACGAGGGCCTCGTTCCGGAGCTCCA
ACAAAGGCCTTCTAGAGGCTTGCTGGATGAATGCAGCCGACCAGGACGACTGGGTTAGCCTTCAAGAGGAATCTTCAGGA
GGTTGGAGCGATGAAGTCATCCAAGAATCTCTTCAGGGCACTGTCCTGTTCAATGCCTCCAGGCTGTGTTATAGCCCAGA
CGCCGTGGTGTATGACGGTTCGTTTGAGGACGTGCTGCCTGTGAAGAAAGAAGACGTGCATCTGAGAGGCTTGGAGGGCA
GATGTCTCTCAGTGGAGGAAGTGCTGATGCAGCACAAGGATTTCCCTGATGCGGGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7298.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis