Browse Element(s) Details


Os.33798.1.S1_at

Description gb:AK074008.1
DB_XREF= gi:32984031
TID=Os.33798.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0081P02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033078M15, full insert sequence.
FL= gb:AK074008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1241411/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33798.1.S1_at--992--8991Chr03:6536247..6536271 (25 bp)
TGAAGATCCAGAGTACCACCTCGTT
LOC_Os03g12414
Os.33798.1.S1_at--845--1711Chr03:6536158..6536257 (25 bp)
ACCACCTCGTTTGCTCAGGATGCAA
LOC_Os03g12414
Os.33798.1.S1_at--411--9511Chr03:6535800..6535824 (25 bp)
TCTCGTTGAGCCGTCTGCCTTTTGG
LOC_Os03g12414
Os.33798.1.S1_at--45--3711Chr03:6535771..6535795 (25 bp)
CTAGAGTGAATAGGGTCGGCACGTT
LOC_Os03g12414
Os.33798.1.S1_at--862--4091Chr03:6535733..6535757 (25 bp)
CGACGGGTAATGTGGTGTGCCAACA
LOC_Os03g12414
Os.33798.1.S1_at--144--7751Chr03:6535720..6535744 (25 bp)
GGTGTGCCAACAACTTTCAGCTGCT
LOC_Os03g12414
Os.33798.1.S1_at--954--1051Chr03:6535680..6535704 (25 bp)
AGGTGGCGATCAACCAGTCCCGGCA
LOC_Os03g12414
Os.33798.1.S1_at--712--1971Chr03:6535656..6535680 (25 bp)
ACTGAACTACTGAACCTGAAGTGGT
LOC_Os03g12414
Os.33798.1.S1_at--191--7511Chr03:6535636..6535660 (25 bp)
GTGGTTACTCCATTCATCGACAGAG
LOC_Os03g12414
Os.33798.1.S1_at--790--5611Chr03:6535540..6535564 (25 bp)
GACAAATTATTTAACGCCACATCGA
LOC_Os03g12414
Os.33798.1.S1_at--833--8471Chr03:6535511..6535535 (25 bp)
TGGTAAATGCTTATTTGCCCCTTCC
LOC_Os03g12414
Target Sequence 
TGAAGATCCAGAGTACCACCTCGTTTGCTCAGGATGCAACAGGAAGGGTCTGCATCCAGGTGGGCTACCTGAAGTGGACG
AAGCGGTCATCTTCGTGCCGCTGCTCGAGTGGCCTAGTGGGGACCCCGGCTGCGCCCGATGCCTCGGCCACTTTAAAAAC
TCGGATCGCGAGAGTTCCTGCACGCCATAAAAATGAGGAAAACGAGAAAGAAGGGAGGGCGTTCGCGTACACCCCCCTTT
CAGCCCCACTTGCGCCCGCGCTCTCGTTGAGCCGTCTGCCTTTTGGGGTTCTAGAGTGAATAGGGTCGGCACGTTAGCGG
CGAGCCGGCGACGGGTAATGTGGTGTGCCAACAACTTTCAGCTGCTGCTGAAGTGAAGAGCAGGTGGCGATCAACCAGTC
CCGGCACTGAACTACTGAACCTGAAGTGGTTACTCCATTCATCGACAGAGATATTTAATTATTTGTCACTTTTAGATGTA
ATATTTTACCACATAAACCTACAAATCATAAACATATAAGTGACAAATTATTTAACGCCACATCGAAAAATGGTAAATGC
TTATTTGCCCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis