Browse Element(s) Details


OsAffx.3208.1.S1_at

Description tigr:9631.m01163
TID=OsAffx.3208.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12350Os.11949.1.S1_at11/113+6491886..6497626myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3208.1.S1_at--665--3811Chr03:6520974..6520998 (25 bp)
CTCCATTTCATGTGTGATAAACTGA
LOC_Os03g12380
OsAffx.3208.1.S1_at--983--2551Chr03:6520955..6520979 (25 bp)
AACTGAGAATTGAAGCGCGTGCGGC
LOC_Os03g12380
OsAffx.3208.1.S1_at--626--4571Chr03:6520941..6520965 (25 bp)
GCGCGTGCGGCTATTCAGAACATGG
LOC_Os03g12380
OsAffx.3208.1.S1_at--423--7991Chr03:6520918..6520942 (25 bp)
GGATGTTTGTTCAGGCTATGCAGCA
LOC_Os03g12380
OsAffx.3208.1.S1_at--851--9031Chr03:6520900..6520924 (25 bp)
TGCAGCATTGCAACGTCATCGTCAA
LOC_Os03g12380
OsAffx.3208.1.S1_at--1130--5611Chr03:6520852..6520876 (25 bp)
GACACAGAACATGGTAAAGGACACA
LOC_Os03g12380
OsAffx.3208.1.S1_at--1094--5611Chr03:6520833..6520857 (25 bp)
GACACAGAACCTAGGGCTATAACCA
LOC_Os03g12380
OsAffx.3208.1.S1_at--401--10171Chr03:6520816..6520840 (25 bp)
TATAACCAAAAAATGCGCATCCGGG
LOC_Os03g12380
OsAffx.3208.1.S1_at--422--5138Chr09:13817501..13817526 (25 bp)
GAATCGAACCCGGTCAGTACCGTGG
NONE
OsAffx.3208.1.S1_at--467--9959Chr09:13817519..13817543 (25 bp)
TACCGTGGGAGGGTACTATGATACC
NONE
OsAffx.3208.1.S1_at--976--10119Chr09:13817535..13817559 (25 bp)
TATGATACCACTACACCAGATGCGC
NONE
Target Sequence 
CTCCATTTCATGTGTGATAAACTGAGAATTGAAGCGCGTGCGGCTATTCAGAACATGGATGTTTGTTCAGGCTATGCAGC
ATTGCAACGTCATCGTCAAGCATTTGTTCGTGGCAAAAAGATGACACAGAACATGGTAAAGGACACAGAACCTAGGGCTA
TAACCAAAAAATGCGCATCCGGGGAATCGAACCCGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGATGCG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis