Browse Element(s) Details


Os.16872.1.S1_at

Description gb:AK070170.1
DB_XREF= gi:32980194
TID=Os.16872.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.16872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0081P02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041A11, full insert sequence.
FL= gb:AK104423.1 gb:AK070170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1239011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16872.1.S1_at--669--7831Chr03:6524780..6524804 (25 bp)
GGTAGCGATCCTTGAGCTGTACCTC
LOC_Os03g12390
Os.16872.1.S1_at--48--9431Chr03:6524637..6524661 (25 bp)
TCGTGTCGCGGTGCCTCGAGAAGAA
LOC_Os03g12390
Os.16872.1.S1_at--191--1531Chr03:6524505..6524529 (25 bp)
AGCAGAGCGGCGATCTATAGCCAAT
LOC_Os03g12390
Os.16872.1.S1_at--1082--9711Chr03:6524490..6524514 (25 bp)
TATAGCCAATCGAGCCGCCGGTTAA
LOC_Os03g12390
Os.16872.1.S1_at--308--5871Chr03:6524479..6524503 (25 bp)
GAGCCGCCGGTTAAATTAACTCTGC
LOC_Os03g12390
Os.16872.1.S1_at--407--9811Chr03:6524463..6524487 (25 bp)
TAACTCTGCAGATTTAGGAACCAAT
LOC_Os03g12390
Os.16872.1.S1_at--763--6311Chr03:6524434..6524458 (25 bp)
GATGACGTGTACATAATCTCTGCCA
LOC_Os03g12390
Os.16872.1.S1_at--76--9771Chr03:6524421..6524445 (25 bp)
TAATCTCTGCCACGTGGACGAACAG
LOC_Os03g12390
Os.16872.1.S1_at--199--5791Chr03:6524405..6524429 (25 bp)
GACGAACAGCTTTGTCCCGTGTGTT
LOC_Os03g12390
Os.16872.1.S1_at--13--10391Chr03:6524366..6524390 (25 bp)
TTTTCACTTCTTGCCATCCAAGGAT
LOC_Os03g12390
Os.16872.1.S1_at--94--9771Chr03:6524329..6524353 (25 bp)
TAAGTTCGTTCTTGGCCAAATTACA
LOC_Os03g12390
Target Sequence 
GGTAGCGATCCTTGAGCTGTACCTCGGCCACTTCCCGCTTCTCCCCGTGGGGCAGCGCCCCGACTGGGCGGCGCTCATGT
GCGCCATATGCTTCGGCGAGGCGCCGGAGATGCCGGCCGCCGCGTCGGAGGAGTTCCGGGACTTCGTGTCGCGGTGCCTC
GAGAAGAAGGCCGGGCGGCGCGCGTCGGTCGGCGAGCTGCTCGAGCACCCGTTCATCGCCGAGCGGGACGCCGCCGATGC
GCAGCGCTCGCTCGCCGCGCTCGTCGCCGAGGCGGAGCAGAGCGGCGATCTATAGCCAATCGAGCCGCCGGTTAAATTAA
CTCTGCAGATTTAGGAACCAATCAGAGATGACGTGTACATAATCTCTGCCACGTGGACGAACAGCTTTGTCCCGTGTGTT
TTTTTCTTCCTCTCTTTTCACTTCTTGCCATCCAAGGATTTGTTTGTTTTTTAAGTTCGTTCTTGGCCAAATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis