Browse Element(s) Details


Os.33798.2.S1_x_at

Description gb:AK065907.1
DB_XREF= gi:32975925
TID=Os.33798.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0081P02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044F04, full insert sequence.
FL= gb:AK065907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1241411/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33798.2.S1_x_at--772--8451Chr03:6537388..6537412 (25 bp)
TGGCGAAGTACTTGGCCTTGCTCTC
LOC_Os03g12414
Os.33798.2.S1_x_at--146--6411Chr03:6536974..6536994 (21 bp)
GATCTGCCTGAATGCCTAATGAGTC
LOC_Os03g12414
Os.33798.2.S1_x_at--757--7911Chr03:6536816..6536840 (25 bp)
GGTTGACCAATTATGCTTCCTGATT
LOC_Os03g12414
Os.33798.2.S1_x_at--993--2351Chr03:6536786..6536810 (25 bp)
AAACCCAGGTGATATGCCGACCCAA
LOC_Os03g12414
Os.33798.2.S1_x_at--475--9171Chr03:6536756..6536780 (25 bp)
TGCCCATTCCCAGAAACACAGTGTA
LOC_Os03g12414
Os.33798.2.S1_x_at--81--1971Chr03:6536686..6536710 (25 bp)
ACTGTAGCTAATTCTTCGTGCATAG
LOC_Os03g12414
Os.33798.2.S1_x_at--256--5411Chr03:6536626..6536650 (25 bp)
GAAGCCGGCTAAACGTGGTTGTGAT
LOC_Os03g12414
Os.33798.2.S1_x_at--136--8511Chr03:6536602..6536626 (25 bp)
TGGCACCAGACTTATAGGGAGCATC
LOC_Os03g12414
Os.33798.2.S1_x_at--195--7651Chr03:6536586..6536610 (25 bp)
GGGAGCATCGCAACCACGAAATTTT
LOC_Os03g12414
Os.33798.2.S1_x_at--186--9191Chr03:6536553..6536577 (25 bp)
TGCCGGCTTCAGTGACTACGACTAA
LOC_Os03g12414
Os.33798.2.S1_x_at--440--2631Chr03:6536530..6536554 (25 bp)
AACCTCCTGTTGTAAGCTGTCTTAA
LOC_Os03g12414
Target Sequence 
TGGCGAAGTACTTGGCCTTGCTCTCACTTCTGGACCACAAACATCTCTCCTTCTGGCCCTCCACTGTGGCAGCCGCAGTG
GTAGCCCTTGCTTGCCTTGCCACAAACAATGAGTCATCATGCCATTTGGTTATGGAGACTCACATGAGAACGAAGAATGA
TGATCTGCCTGAATGCCTAATGAGTCTCGAATGGTTGACCAATTATGCTTCCTGATTTGAACAAACCCAGGTGATATGCC
GACCCAATCTTCTGCCCATTCCCAGAAACACAGTGTAGTACGTACAGAGTCGCTTAGGAGGAGGTGTATATAGTACACGT
GCACTGTAGCTAATTCTTCGTGCATAGCATTAGTTTGACAGCAGGGTAGAAAAGAGGGCAAAGAAGCCGGCTAAACGTGG
TTGTGATGGCACCAGACTTATAGGGAGCATCGCAACCACGAAATTTTGCTACTACTGCCGGCTTCAGTGACTACGACTAA
CCTCCTGTTGTAAGCTGTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33798.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis