Browse Element(s) Details


Os.11949.1.S1_at

Description gb:AK111864.1
DB_XREF= gi:37988527
TID=Os.11949.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative response regulator 10 (OSJNBa0081P02.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025G23, full insert sequence.
FL= gb:AK111899.1 gb:AK111864.1 gb:AK112039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1235011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12320Os.38092.1.S1_at11/113+6473023..6478089UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed
LOC_Os03g12330NANA3+6484157..6484597hypothetical protein
LOC_Os03g12340Os.47130.4.A1_x_at5/113+6485933..6486190retrotransposon protein, putative, unclassified
LOC_Os03g12350Os.11949.1.S1_at11/113+6491886..6497626myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009736biological_processcytokinin mediated signaling
GO:0000156molecular_functiontwo-component response regulator activity
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11949.1.S1_at--612--8951Chr03:6496639..6496663 (25 bp)
TGACATCACTGGTAGCTGGTCGCCT
LOC_Os03g12350
Os.11949.1.S1_at--1071--7231Chr03:6496657..6496681 (25 bp)
GTCGCCTCTGCCGAATGTTGACAGT
LOC_Os03g12350
Os.11949.1.S1_at--1010--7811Chr03:6496685..6496709 (25 bp)
GGTAATACTGTTGGGCTAAGCCACC
LOC_Os03g12350
Os.11949.1.S1_at--946--7691Chr03:6496712..6496736 (25 bp)
GGGTCCAGTTCATCTAGTTTTCAAA
LOC_Os03g12350
Os.11949.1.S1_at--16--8331Chr03:6496747..6496771 (25 bp)
GGCTCTTGGGAAATTGCCTGATCAA
LOC_Os03g12350
Os.11949.1.S1_at--51--1031Chr03:6496804..6496828 (25 bp)
AGGTACTTGCATTCCAAGCCGCTTT
LOC_Os03g12350
Os.11949.1.S1_at--72--3251Chr03:6496818..6496842 (25 bp)
CAAGCCGCTTTGCAGTGGATGAGAT
LOC_Os03g12350
Os.11949.1.S1_at--1140--10111Chr03:6496894..6496918 (25 bp)
TATGAGCCCTGATATTTTCGGATTT
LOC_Os03g12350
Os.11949.1.S1_at--148--1931Chr03:6497411..6497435 (25 bp)
ACGGTTGCCGTGTTTTTCATTTCAT
LOC_Os03g12350
Os.11949.1.S1_at--389--5651Chr03:6497485..6497509 (25 bp)
GACAGCATGTCGAATCTTGGTTTAT
LOC_Os03g12350
Os.11949.1.S1_at--1032--5671Chr03:6497556..6497580 (25 bp)
GACATAGCTCATTTTCCTTTGTTCA
LOC_Os03g12350
Target Sequence 
TGACATCACTGGTAGCTGGTCGCCTCTGCCGAATGTTGACAGTTATGGTAATACTGTTGGGCTAAGCCACCCNTGGGTCC
AGTTCATCTAGTTTTCAAAGTTCTAATGTGGCTCTTGGGAAATTGCCTGATCAAGGGCGAGGAAAGAATCATGGATTTGT
TGGTAAAGGTACTTGCATTCCAAGCCGCTTTGCAGTGGATGAGATTGAATCTCCAACTAACAACTTGAGTCACAGCATTG
GAAGCAGTGGAGATATTATGAGCCCTGATATTTTCGGATTTAGTGGACAGATGTGAAGGCTTCTTGAATTTGTAAGNTAG
GGTAATCACTGGAAACAATTTTTAGTGGGTTGATGAACGGTTGCCGTGTTTTTCATTTCATCCTTTTTTTTTTTTCCTTC
TGTAATTGGTTTATAAANGGAATAATTTATGTGACAGCATGTCGAATCTTGGTTTATAGAAGGTTGTTCGGTTTAAACAA
CTTTGGATTANNNAGCCTCATGTGACATAGCTCATTTTCCTTTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis