Browse Element(s) Details


Os.38092.1.S1_at

Description gb:AK066490.1
DB_XREF= gi:32976508
TID=Os.38092.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0081P02.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071N01, full insert sequence.
FL= gb:AK066490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1232011/11UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12300Os.11686.2.S1_x_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.11686.1.S1_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_at2/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_x_at1/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12310OsAffx.20517.1.S1_at11/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12310OsAffx.20517.2.S1_x_at7/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12320Os.38092.1.S1_at11/113+6473023..6478089UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed
LOC_Os03g12330NANA3+6484157..6484597hypothetical protein
LOC_Os03g12340Os.47130.4.A1_x_at5/113+6485933..6486190retrotransposon protein, putative, unclassified
LOC_Os03g12350Os.11949.1.S1_at11/113+6491886..6497626myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009245biological_processlipid A biosynthesis
GO:0008759molecular_functionUDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38092.1.S1_at--363--5031Chr03:6475944..6475968 (25 bp)
GCAGTATTTCTGGTGGTTGGCTTAA
LOC_Os03g12320
Os.38092.1.S1_at--721--10451Chr03:6475965..6475989 (25 bp)
TTAATCCACCACTGCGGTTTGAGGA
LOC_Os03g12320
Os.38092.1.S1_at--360--10771Chr03:6475983..6476007 (25 bp)
TTGAGGATGAACCTTGCCGCCACAA
LOC_Os03g12320
Os.38092.1.S1_at--635--8831Chr03:6476026..6476050 (25 bp)
TGATTTCTCGCTTCTTGCACAGAAT
LOC_Os03g12320
Os.38092.1.S1_at--548--3471Chr03:6476057..6476081 (25 bp)
CAGGGTTTTCCACTTGCTCATGTAG
LOC_Os03g12320
Os.38092.1.S1_at--12--4971Chr03:6477700..6477724 (25 bp)
GCATACTGATTTCCTACGGCATTTG
LOC_Os03g12320
Os.38092.1.S1_at--822--2711Chr03:6477773..6477797 (25 bp)
AAGCATATGGATACCGCTGCTCCGT
LOC_Os03g12320
Os.38092.1.S1_at--784--2391Chr03:6477832..6477856 (25 bp)
AAACATAGGATGGTCGCCCTTCTTC
LOC_Os03g12320
Os.38092.1.S1_at--784--1551Chr03:6477858..6477882 (25 bp)
AGCTAGGCCATGCAGTACCAACTAT
LOC_Os03g12320
Os.38092.1.S1_at--1001--3111Chr03:6477892..6477916 (25 bp)
AATTATCTGCCAGCCATTTTTCCAT
LOC_Os03g12320
Os.38092.1.S1_at--532--3071Chr03:6477953..6477977 (25 bp)
AATCATGTAGCCCATCAGCATCTGT
LOC_Os03g12320
Target Sequence 
GCAGTATTTCTGGTGGTTGGCTTAATCCACCACTGCGGTTTGAGGATGAACCTTGCCGCCACAAGATTTTAGATCTTATC
GGTGATTTCTCGCTTCTTGCACAGAATGGTAACCAGGGTTTTCCACTTGCTCATGTAGTTGCCTACAAGGCTGGTCATGC
CCTGCATACTGATTTCCTACGGCATTTGTTGGGAAGGAGCGCTGTGGGCCAAGAAAACCTTGCTGAGCAATGTTGAAAGC
ATATGGATACCGCTGCTCCGTCGATAATGGCAAGGACGCAAAATTTCAAGGATACAAACATAGGATGGTCGCCCTTCTTC
CAGCTAGGCCATGCAGTACCAACTATTCATCTTGCAATTATCTGCCAGCCATTTTTCCATCTATTCCTTTCTCTCTCTTT
CTTTTTTGATCTGATGAATCATGTAGCCCATCAGCATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis