Browse Element(s) Details


Os.11686.2.S1_x_at

Description gb:NM_187698.1
DB_XREF= gi:34902481
GEN=OJ1743A09.20
TID=Os.11686.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11686 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1743A09.20), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1230011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed
LOC_Os03g12270Os.45954.1.S1_at11/113+6432197..6434699mannitol dehydrogenase, putative, expressed
LOC_Os03g12280NANA3+6435583..6436190hypothetical protein
LOC_Os03g12290Os.12728.1.S1_at11/113+6437026..6441842Glutamine synthetase root isozyme 5, putative, expressed
LOC_Os03g12300Os.11686.2.S1_x_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.11686.1.S1_at11/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_at2/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12300Os.52150.1.S1_x_at1/113+6447427..6455524HEAT repeat family protein, expressed
LOC_Os03g12310OsAffx.20517.1.S1_at11/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12310OsAffx.20517.2.S1_x_at7/113+6459539..6466629retrotransposon protein, putative, unclassified
LOC_Os03g12320Os.38092.1.S1_at11/113+6473023..6478089UDP-3-0-acyl N-acetylglucosamine deacetylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11686.2.S1_x_at--914--7091Chr03:6450959..6450983 (25 bp)
GTCACTCTCCGATGGCTACAATAAG
LOC_Os03g12300
Os.11686.2.S1_x_at--843--351Chr03:6450939..6450963 (25 bp)
ATAAGCTTGTGTCTACTTGCGCAGG
LOC_Os03g12300
Os.11686.2.S1_x_at--678--7351Chr03:6450779..6450803 (25 bp)
GTGAAGTTTCTCGTGCAACTAGACA
LOC_Os03g12300
Os.11686.2.S1_x_at--472--5991Chr03:6450737..6450761 (25 bp)
GAGACTCCTGTATTTGCTTACTTAC
LOC_Os03g12300
Os.11686.2.S1_x_at--741--6851Chr03:6450148..6450171 (24 bp)
GTTTGCAGCTTCTTGAGCCTGGAAA
LOC_Os03g12300
Os.11686.2.S1_x_at--1158--8151Chr03:6450128..6450152 (25 bp)
GGAAAACATACCTGGCTTCTCAAAA
LOC_Os03g12300
Os.11686.2.S1_x_at--748--2471Chr03:6450105..6450129 (25 bp)
AACACTTTATGGTCTCCTGATGCTA
LOC_Os03g12300
Os.11686.2.S1_x_at--1115--2311Chr03:6448831..6448855 (25 bp)
AAAGTGCAGCCTTCAAGATCTTGAG
LOC_Os03g12300
Os.11686.2.S1_x_at--1019--1431Chr03:6448808..6448832 (25 bp)
AGAACTCGGCTGAAGACTGTGCCTT
LOC_Os03g12300
Os.11686.2.S1_x_at--573--5111Chr03:6448765..6448789 (25 bp)
GCACATCTTCAACAAATCCATACTC
LOC_Os03g12300
Os.11686.2.S1_x_at--825--2731Chr03:6447942..6447966 (25 bp)
AAGAAGCACATTCCTCTTCGACATC
LOC_Os03g12300
Target Sequence 
GTCACTCTCCGATGGCTACAATAAGCTTGTGTCTACTTGCGCAGGCATACAATCATGCAATTTCTGTTATCCAGTCTTTG
GGAGAGGAAGATATAAATGTGAAGTTTCTCGTGCAACTAGACAAATTAATCCGTCTTTTAGAGACTCCTGTATTTGCTTA
CTTACGTTTGCAGCTTCTTGAGCCTGGAAAACATACCTGGCTTCTCAAAACACTTTATGGTCTCCTGATGCTACTGCCTC
AGCAAAGTGCAGCCTTCAAGATCTTGAGAACTCGGCTGAAGACTGTGCCTTTCAGTGAAAATTTGAAACGCACATCTTCA
ACAAATCCATACTCTCAGATTCTACAAGTGACAGAAGATGGTAATCGAAATCACGACACTCAGAGCTACAATGCAATCAA
TTTCCCATCCCGGCTCCACCAGTTTGAGAGCATGCAGCAGCAGCACAGAGTTCATCTAAAGAATCAACTGCAATCCCAAA
AATCTGCTTCAGCTATAGTATTATCACAGGAAATTCAAAGATACGAAGAAGCACATTCCTCTTCGACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11686.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis