Browse Element(s) Details


Os.43918.1.S1_at

Description gb:NM_187606.1
DB_XREF= gi:34902297
TID=Os.43918.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0081P02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OSJNBa0081P02.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g124601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43918.1.S1_at--541--5531Chr03:6566300..6566324 (25 bp)
GAAACACATTTGCACACCCTAGTAG
NONE
Os.43918.1.S1_at--483--5411Chr03:6566330..6566354 (25 bp)
GAAGCTGATAGCATTCTTAGGAAAT
LOC_Os03g12460
Os.43918.1.S1_at--437--5931Chr03:6566525..6567038 (25 bp)
GAGCAGCTGCAGAAAACTACATCCA
NONE
Os.43918.1.S1_at--985--9871Chr03:6567031..6567055 (25 bp)
TACATCCAACGTGCCAACCAATAAA
NONE
Os.43918.1.S1_at--178--3291Chr03:6567058..6567082 (25 bp)
CAAACTGGCAGTTCGGTTGCTCATA
NONE
Os.43918.1.S1_at--922--6671Chr03:6567073..6567224 (25 bp)
GTTGCTCATATGCAGATTGCTTTCC
NONE
Os.43918.1.S1_at--695--11Chr03:6567218..6567239 (22 bp)
ATTGCTTTCCTTGTGGCCCCTTATA
NONE
Os.43918.1.S1_at--591--7551Chr03:6567227..6567251 (25 bp)
GTGGCCCCTTATAGTTCTATCCAAG
NONE
Os.43918.1.S1_at--528--2691Chr03:6567249..6567273 (25 bp)
AAGCTCCTTTTTGCGCTGATTTGGC
NONE
Os.43918.1.S1_at--817--211Chr03:6567267..6567291 (25 bp)
ATTTGGCGCATGGACCAGCTGGAGT
NONE
Os.43918.1.S1_at--899--7911Chr03:6567331..6567355 (25 bp)
GGTTGGAAATAAGTGCTGCTAATCA
NONE
Target Sequence 
GAAACACATTTGCACACCCTAGTAGATAAAGAAGCTGATAGCATTCTTAGGAAATGTGGACTATCAAACAAGATGCCATA
CATAAAGGACTATAGCTCTACTGGCAGCAAGGATGACGCACGACCTTTGGCTGATATTGTGGAGACATCACCGCAAATGT
TGTTGGAATGCTTGAAGGCATTCTATGGTCTAGTGACTGGAACAGAAGGTTCCTTGCCTGAATTTGAGCAGCTGCAGAAA
ACTACATCCAACGTGCCAACCAATAAAGTCAAACTGGCAGTTCGGTTGCTCATATGCAGATTGCTTTCCTTGTGGCCCCT
TATAGTTCTATCCAAGCTCCTTTTTGCGCTGATTTGGCGCATGGACCAGCTGGAGTGGTTGACTGCAGCAAGGAAAGAAA
ATCTGAAGTTTGGCAGGTTGGAAATAAGTGCTGCTAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis