Browse Element(s) Details


Os.12199.1.S1_at

Description gb:AK068392.1
DB_XREF= gi:32978410
TID=Os.12199.1
CNT=65
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12199 (NCBI UniGene Cluster)
UG_TITLE=MRNA for OsNAC6 protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149P14, full insert sequence.
FL= gb:AB028185.1 gb:AK068392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6612010/11NAC-domain containing protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66100Os.19823.1.S1_at11/111+38709242..38712353Gibberellin 20 oxidase 2, putative, expressed
LOC_Os01g66110Os.5194.2.S1_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66110Os.5194.1.S1_x_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66120Os.12199.1.S1_at10/111+38725728..38728330NAC-domain containing protein 2, putative, expressed
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed
LOC_Os01g66140Os.52769.1.S1_at6/111+38740330..38751209Plus-3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12199.1.S1_at--1054--7591Chr01:38726341..38726365 (25 bp)
GGGCAAGCCATTCTAGACGACCAAA
LOC_Os01g66120
Os.12199.1.S1_at--848--2411Chr01:38726310..38726334 (25 bp)
AAAAAACAACCGCATTGGCAGCAAT
LOC_Os01g66120
Os.12199.1.S1_at--782--1971Chr01:38726279..38726303 (25 bp)
ACTGAACACCGTGCAGGCTAGCTAG
LOC_Os01g66120
Os.12199.1.S1_at--558--3711Chr01:38726262..38726286 (25 bp)
CTAGCTAGCTTCATGGCCGGTGAAC
LOC_Os01g66120
Os.12199.1.S1_at--19--7371Chr01:38726243..38726267 (25 bp)
GTGAACTTTGACTCAGGCGAGCCGC
LOC_Os01g66120
Os.12199.1.S1_at--928--5871Chr01:38726225..38726249 (25 bp)
GAGCCGCCGGAGTTGACTCAAAGAT
LOC_Os01g66120
Os.12199.1.S1_at--1065--3911Chr01:38726106..38726130 (25 bp)
CTGGCCTGGACTGAACGACGACGAG
LOC_Os01g66120
Os.12199.1.S1_at--224--7591Chr01:38725983..38726007 (25 bp)
GGGCTAGCTTTCCTGTTTCTGTTTC
LOC_Os01g66120
Os.12199.1.S1_at--332--9911NONE
TACTCCCACTTATAAGGTCTTCTTC
NONE
Os.12199.1.S1_at--989--7131Chr01:38725927..38725951 (25 bp)
GTCTTCTTCAGGGTTGCTAGCTTAA
LOC_Os01g66120
Os.12199.1.S1_at--195--9991Chr01:38725889..38725913 (25 bp)
TAGCCCAGTGGTTGAAGTGTAAGTC
LOC_Os01g66120
Target Sequence 
GGGCAAGCCATTCTAGACGACCAAAAAAAAAAAAAAACAACCGCATTGGCAGCAATGGTGTCACTGAACACCGTGCAGGC
TAGCTAGCTTCATGGCCGGTGAACTTTGACTCAGGCGAGCCGCCGGAGTTGACTCAAAGATAATTAAAAGAAGTGTNTTA
AGTGGATTGGATTGGATTAGACAGAGGAGATGAGGACTCGAGAAAGGCGGCGATGAGACCGTGGTTGGGGGGACCCTGGC
CTGGACTGAACGACGACGAGGCAGCAGCAGAAAGATGGTGCAATTGCATCGGGTGGCATGTCAGTGTGTGTGTATAGTGG
CATGTACATAGTACATGGTGATTGATTCGGTATACAGGGGGCTAGCTTTCCTGTTTCTGTTTCTTCANTTGGTTAATTAT
TACTCCCACTTATAAGGTCTTCTTCAGGGTTGCTAGCTTAATTAATTAATTAATTAGCCCAGTGGTTGAAGTGTAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis