Browse Element(s) Details


Os.19823.1.S1_at

Description gb:AY114310.1
DB_XREF= gi:21586450
TID=Os.19823.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19823 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) gibberellin 20-oxidase mRNA, complete cds.
PROD=gibberellin 20-oxidase
FL= gb:AB077025.1 gb:AY114310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6610011/11Gibberellin 20 oxidase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66090NANA1+38678991..38684996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g66100Os.19823.1.S1_at11/111+38709242..38712353Gibberellin 20 oxidase 2, putative, expressed
LOC_Os01g66110Os.5194.2.S1_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66110Os.5194.1.S1_x_at11/111+38713118..38718607dehydration-responsive protein, putative, expressed
LOC_Os01g66120Os.12199.1.S1_at10/111+38725728..38728330NAC-domain containing protein 2, putative, expressed
LOC_Os01g66130Os.17102.1.S1_at10/111+38736091..38739906arm repeat-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009639biological_processresponse to red or far red light
GO:0009686biological_processgibberellic acid biosynthesis
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0005737cellular_componentcytoplasm
GO:0016707molecular_functiongibberellin 3-beta-dioxygenase activity
GO:0045544molecular_functiongibberellin 20-oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19823.1.S1_at--832--3611Chr01:38711770..38711794 (25 bp)
CTGTCGAACGGGAGGTATAAGAGCT
LOC_Os01g66100
Os.19823.1.S1_at--74--1031Chr01:38711782..38711806 (25 bp)
AGGTATAAGAGCTGCCTGCACAGGG
LOC_Os01g66100
Os.19823.1.S1_at--622--4031Chr01:38711843..38711867 (25 bp)
CGTTCTTCCTGTGCCCGCGGGAGGA
LOC_Os01g66100
Os.19823.1.S1_at--861--3391Chr01:38712051..38712075 (25 bp)
CAGCTGATCGCCGAACGGAACGAAA
LOC_Os01g66100
Os.19823.1.S1_at--224--5551Chr01:38712072..38712096 (25 bp)
GAAACGGAACGAACAGAAGCCGATT
LOC_Os01g66100
Os.19823.1.S1_at--793--9191Chr01:38712189..38712213 (25 bp)
TCCAATTTTGGACCCTACCGCTGTA
LOC_Os01g66100
Os.19823.1.S1_at--441--1811Chr01:38712200..38712224 (25 bp)
ACCCTACCGCTGTACATATTCATAT
LOC_Os01g66100
Os.19823.1.S1_at--446--1431Chr01:38712234..38712258 (25 bp)
AGAAGCAAAACGTACGTGTGGGTTG
LOC_Os01g66100
Os.19823.1.S1_at--236--6631Chr01:38712260..38712284 (25 bp)
GTTGGGCTTCTCTCTATTACTAAAA
LOC_Os01g66100
Os.19823.1.S1_at--1152--3951Chr01:38712302..38712326 (25 bp)
CGGATGAATGGATGCTTATTTATTT
LOC_Os01g66100
Os.19823.1.S1_at--73--3711Chr01:38712329..38712353 (25 bp)
CTAAATTGAATTCGAATTCGGCTCA
LOC_Os01g66100
Target Sequence 
CTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGGCGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTT
CCTGTGCCCGCGGGAGGACAGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACCTGGG
CCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACGCCTTCACGCGCTGGCTCGCGCCG
CCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGGCGGCCAGCTGATCGCCGAACGGAACGAAACGGAACGAACAGAA
GCCGATTTTTGGCGGGGCCCACGNNNNNNNNNNNCCCACGTGAGGCCCCACGTGGACAGTGGGCCCGGGCGGAGGTGGCA
CCCACGTGGACCGCGGGCCCCGCGCCGCCTTCCAATTTTGGACCCTACCGCTGTACATATTCATATATTGCAAGAAGAAG
CAAAACGTACGTGTGGGTTGGGTTGGGCTTCTCTCTATTACTAAAAAAAATATAATGGAACGNCGGATGAATGGATGCTT
ATTTATTTATCTAAATTGAATTCGAATTCGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis