Browse Element(s) Details


Os.12227.1.S1_at

Description gb:AK067169.1
DB_XREF= gi:32977187
TID=Os.12227.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098B11, full insert sequence.
FL= gb:AK067169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4125011/11Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os06g278701/11Signal recognition particle receptor beta subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41200OsAffx.17450.1.S1_at11/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41200OsAffx.6101.1.S1_at1/118+25890021..25890747speckle-type POZ protein, putative
LOC_Os08g41210OsAffx.17451.1.S1_at11/118+25891924..25893397expressed protein
LOC_Os08g41220OsAffx.6102.1.S1_at10/118+25895326..25899804BTB/POZ domain containing protein
LOC_Os08g41230OsAffx.17452.1.S1_at11/118+25904090..25906978BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41240OsAffx.17453.1.S1_x_at11/118+25911424..25912473BTB/POZ domain containing protein
LOC_Os08g41250Os.12227.1.S1_at11/118+25913926..25916839Signal recognition particle receptor beta subunit, putative, expressed
LOC_Os08g41260NANA8+25920151..25923460retrotransposon protein, putative, unclassified
LOC_Os08g41270Os.24424.1.S1_at11/118+25929623..25936998Type II inositol-1,4,5-trisphosphate 5-phosphatase 12, putative, expressed
LOC_Os08g41280Os.5193.1.S1_at10/118+25939337..25941934auxin-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005047molecular_functionsignal recognition particle binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12227.1.S1_at--147--672Chr08:25914984..25915008 (25 bp)
ATGAAGTCCTGCCTCAAGCAGCTGG
LOC_Os08g41250
Os.12227.1.S1_at--557--191Chr08:25914933..25914957 (25 bp)
ATTTCTTGTCTACCATGCATGCTGC
LOC_Os08g41250
Os.12227.1.S1_at--259--631Chr08:25914704..25914939 (25 bp)
ATGCTGCTGCAGAGTACTTGTATGA
LOC_Os08g41250
Os.12227.1.S1_at--494--7671Chr08:25914647..25914671 (25 bp)
GGGTTCCTGTTCTGATATTCTGCAA
LOC_Os08g41250
Os.12227.1.S1_at--443--951Chr08:25914286..25914310 (25 bp)
AGGAACGCCATATCATCTGCTGACA
LOC_Os08g41250
Os.12227.1.S1_at--775--3571Chr08:25914244..25914268 (25 bp)
CTTGGGAACCCTGGAGAAGCATTTA
LOC_Os08g41250
Os.12227.1.S1_at--510--6831Chr08:25914160..25914184 (25 bp)
GTTTCAGCGGTTGAGGAGTTCATTC
LOC_Os08g41250
Os.12227.1.S1_at--330--10091Chr08:25914118..25914142 (25 bp)
TAGGCCTTAGAGTTGTCGGACCTTT
LOC_Os08g41250
Os.12227.1.S1_at--375--4691Chr08:25914054..25914078 (25 bp)
GCGGAGACTGATTTTCCTGATGGAA
LOC_Os08g41250
Os.12227.1.S1_at--424--2371Chr08:25914023..25914047 (25 bp)
AAACCTTCATCATCTCATCTGCATC
LOC_Os08g41250
Os.12227.1.S1_at--272--4911Chr08:25913997..25914021 (25 bp)
GCTTCATTCCATTCATGCGTGTGAG
LOC_Os08g41250
Target Sequence 
ATGAAGTCCTGCCTCAAGCAGCTGGAATAGTTTATGTTGTTGATGCTCAAGATTTCTTGTCTACCATGCATGCTGCTGCA
GAGTACTTGTATGACATCCTGACAAAGGCAACTGTAGTGAAGAAGAGGGTTCCTGTTCTGATATTCTGCAACAAGACAGA
TAAAGTTACAGCTCACTCAAAAGAATTCATCAAGAAGCAATTGGAAAAGGAATTAAACAAGCTCCGGGAATCAAGGAACG
CCATATCATCTGCTGACATCACTGATGAAGTCAAGCTTGGGAACCCTGGAGAAGCATTTAATTTCAGCCAATGCCAGAAC
AAGGTGACAGTTACTGAAGGTGCTGGTCTGACCGGTAATGTTTCAGCGGTTGAGGAGTTCATTCGTGAGTATGTGAAAGC
TTAGGCCTTAGAGTTGTCGGACCTTTACAGAATAGAGTTTGTATTCGTTCAAAATTGTCATCTAAGCGGAGACTGATTTT
CCTGATGGAAGAAGGAAAACCTTCATCATCTCATCTGCATCTGCTTCATTCCATTCATGCGTGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis