Browse Element(s) Details

Os.12267.2.S1_s_at

Description

gb:BM037912
DB_XREF= gi:16753533
DB_XREF=S114c12
CLONE=S114c12
TID=Os.12267.2
CNT=34
FEA=EST
TIER=Stack
STK=10
UG=Os.12267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070C14, full insert sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08320	11/11	60S ribosomal protein L39, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08280	Os.53574.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08280	Os.37872.1.S1_at	11/11	6	+	4007140..4012540	Protein kinase domain containing protein, expressed
LOC_Os06g08290	Os.49775.1.S1_at	9/11	6	+	4015075..4018297	terminal acidic SANT 1, putative, expressed
LOC_Os06g08300	OsAffx.4765.1.S1_s_at	3/11	6	+	4018886..4021127	FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310	Os.8093.2.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.1.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.2.S1_x_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	OsAffx.5813.1.S1_x_at	2/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320	Os.12267.2.S1_s_at	11/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08320	Os.46185.1.S1_x_at	1/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08329	NA	NA	6	+	4035587..4035761	NA
LOC_Os06g08340	Os.55579.1.S1_at	11/11	6	+	4039785..4040764	AP2 domain containing protein, expressed
LOC_Os06g08350	OsAffx.15309.1.S1_at	11/11	6	+	4050269..4051805	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12267.2.S1_s_at--84--723	1	Chr06:4033017..4033041 (25 bp)	GTCGCACAAGACGTTCCAGATCAAG	LOC_Os06g08320
Os.12267.2.S1_s_at--191--219	1	Chr06:4033012..4033036 (25 bp)	ACAAGACGTTCCAGATCAAGAAGAA	LOC_Os06g08320
Os.12267.2.S1_s_at--787--337	1	Chr06:4032790..4032814 (25 bp)	CACCAAGCTCGGGTTCTGAGCTTGG	LOC_Os06g08320
Os.12267.2.S1_s_at--508--539	1	Chr06:4032707..4032731 (25 bp)	GAAGCTAGGGCTTATGGGTTGCGTC	LOC_Os06g08320
Os.12267.2.S1_s_at--484--79	1	Chr06:4032694..4032718 (25 bp)	ATGGGTTGCGTCGTGTTCGTTTCGA	LOC_Os06g08320
Os.12267.2.S1_s_at--59--879	1	Chr06:4032681..4032705 (25 bp)	TGTTCGTTTCGAGGTTTTGCCTGTC	LOC_Os06g08320
Os.12267.2.S1_s_at--307--1029	1	Chr06:4032666..4032690 (25 bp)	TTTGCCTGTCCTGAAGAGACTATCA	LOC_Os06g08320
Os.12267.2.S1_s_at--396--599	1	Chr06:4032651..4032675 (25 bp)	GAGACTATCAGTAGCTGTGTGTATC	LOC_Os06g08320
Os.12267.2.S1_s_at--667--389	1	Chr06:4032637..4032661 (25 bp)	CTGTGTGTATCTTGGAGCATCATAA	LOC_Os06g08320
Os.12267.2.S1_s_at--709--361	1	Chr06:4032627..4032651 (25 bp)	CTTGGAGCATCATAATTTTGCTGAT	LOC_Os06g08320
Os.12267.2.S1_s_at--913--1027	1	Chr06:4032611..4032635 (25 bp)	TTTGCTGATTAAAGAACCACTTTCT	LOC_Os06g08320

Target Sequence

GTCGCACAAGACGTTCCAGATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCGTACTGGATCCGCA
TGCGCACCGACAACACCATCAGGTACAACGCGAAGCNGCNGGCACTGGCGCCGCACCAAGCTCGGGTTCTGAGCTTGGGG
AGGAGAGGAGGACGAGGCGCCGGACGCCGCTGCCCTGGGAAGAAGAAGAAGAAGGAGAAGCTAGGGCTTATGGGTTGCGT
CGTGTTCGTTTCGAGGTTTTGCCTGTCCTGAAGAGACTATCAGTAGCTGTGTGTATCTTGGAGCATCATAATTTTGCTGA
TTAAAGAACCACTTTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis