Browse Element(s) Details


Os.12283.1.S1_at

Description gb:AK060493.1
DB_XREF= gi:32970511
TID=Os.12283.1
CNT=60
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.12283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) photosystem-1 F subunit precursor (OSJNBa0010I09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full insert sequence.
FL= gb:AK069791.1 gb:AK059890.1 gb:AF093634.1 gb:AK060493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5667011/11Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009538cellular_componentphotosystem I reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12283.1.S1_at--460--4316Chr05:2021331..2021544 (25 bp)
CCATCGAGAAGACGAAGCGCCGCTT
NONE
Os.12283.1.S1_at--824--5391Chr03:32212638..32212662 (25 bp)
GAAGCGCCGCTTCGAGAACTACGGC
LOC_Os03g56670
Os.12283.1.S1_at--523--1431Chr03:32212624..32212648 (25 bp)
AGAACTACGGCAAGTTCGGCCTGCT
LOC_Os03g56670
Os.12283.1.S1_at--461--8631Chr03:32212490..32212514 (25 bp)
TGGGTCGGCAGGAGCTACCTCATCG
LOC_Os03g56670
Os.12283.1.S1_at--258--5791Chr03:32212331..32212355 (25 bp)
GACGACGCTGACATCGGCTACTGAT
LOC_Os03g56670
Os.12283.1.S1_at--905--2091Chr03:32212321..32212345 (25 bp)
ACATCGGCTACTGATCACCACATGG
LOC_Os03g56670
Os.12283.1.S1_at--963--7971Chr03:32212298..32212322 (25 bp)
GGATGCTTGGCTACTCAAGCCCCAG
LOC_Os03g56670
Os.12283.1.S1_at--21--2671Chr03:32212175..32212306 (25 bp)
AAGCCCCAGGTGAGTTGATTTGGCA
LOC_Os03g56670
Os.12283.1.S1_at--479--3791Chr03:32212136..32212160 (25 bp)
CTCGTGCATGGTGATTTGTGTGGTT
LOC_Os03g56670
Os.12283.1.S1_at--337--9771Chr03:32212051..32212075 (25 bp)
TAAGTCTTGTATACCGTACCTCTCT
LOC_Os03g56670
Os.12283.1.S1_at--324--1751Chr03:32212034..32212058 (25 bp)
ACCTCTCTCTTGTGTGTATTTACCA
LOC_Os03g56670
Target Sequence 
CCATCGAGAAGACGAAGCGCCGCTTCGAGAACTACGGCAAGTTCGGCCTGCTCTGCGGCGCCGACGGCCTCCCGCACCTC
ATCGTCAGCGGCGACCAGCGGCACTGGGGCGAGTTCATCACCCCGGGCTTGCTCTTCCTCTACATCGCCGGCTGGATCGG
CTGGGTCGGCAGGAGCTACCTCATCGCCATCAGCGGCGAGAAGAAGCCGGCCATGAGGGAGATCATCATCGACGTCGAGC
TCGCCGTCAAGCTCCTCCCGAGGGGGTTCATCTGGCCCGTCGCCGCCTACCGTGAGCTCATCACCGGCAACCTCGTCGTC
GACGACGCTGACATCGGCTACTGATCACCACATGGATGCTTGGCTACTCAAGCCCCAGGTGAGTTGATTTGGCAGTGGAG
GAAGAGGGCTCGTGCATGGTGATTTGTGTGGTTTGGGTGTAGAAGCTGATAGGATCATGGAGGAATGGAAGATCTGTTGT
ACTTAAGAAAAACTAAGTCTTGTATACCGTACCTCTCTCTTGTGTGTATTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis