Browse Element(s) Details


Os.48020.1.S1_x_at

Description gb:NM_184975.1
DB_XREF= gi:34897035
GEN=OSJNBa0010I09.12
TID=Os.48020.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48020 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative calmodulin-binding protein (OSJNBa0010I09.12), mRNA.
PROD=putative calmodulin-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5666011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48020.1.S1_x_at--1078--7711Chr03:32209759..32209783 (25 bp)
GGGTGTCTTATTCCTGATCATGTCA
LOC_Os03g56660
Os.48020.1.S1_x_at--1034--7111Chr03:32209780..32209804 (25 bp)
GTCATGATCAATGGCCAACCTGTTC
LOC_Os03g56660
Os.48020.1.S1_x_at--355--8751Chr03:32209800..32209824 (25 bp)
TGTTCCCGTGTCTCCAAAAAATGAT
LOC_Os03g56660
Os.48020.1.S1_x_at--269--2971Chr03:32210362..32210386 (25 bp)
AATGGAACTTCTTACTCTCTGACTG
LOC_Os03g56660
Os.48020.1.S1_x_at--263--9591Chr03:32210396..32210420 (25 bp)
TCTTGAACGGTCTAGGCTCTGGCTT
LOC_Os03g56660
Os.48020.1.S1_x_at--318--10091Chr03:32210408..32210432 (25 bp)
TAGGCTCTGGCTTAGTACAATCAAC
LOC_Os03g56660
Os.48020.1.S1_x_at--1041--1171Chr03:32210584..32210604 (21 bp)
AGTAGTCCCAGGTGCAGATCCACGG
LOC_Os03g56660
Os.48020.1.S1_x_at--14--1111Chr03:32210608..32210632 (25 bp)
AGTGGATATGCCAGCACCTCTACAG
LOC_Os03g56660
Os.48020.1.S1_x_at--595--9131Chr03:32210640..32210664 (25 bp)
TGCTGGTACTTCTTGTCCTGTAACA
LOC_Os03g56660
Os.48020.1.S1_x_at--326--7791Chr03:32210800..32210824 (25 bp)
GGTCCATGGGACTATCCGATTTTCA
LOC_Os03g56660
Os.48020.1.S1_x_at--795--2971Chr03:32210973..32210996 (24 bp)
AATGTTCCAGGAACCGTCAGGACTA
LOC_Os03g56660
Target Sequence 
GGGTGTCTTATTCCTGATCATGTCATGATCAATGGCCAACCTGTTCCCGTGTCTCCAAAAAATGATGCCAGTCATTCCAT
ANAAGNCAANCCAACATGCTTTAATCACCAGATTGCNCTTGAAGNNNNNGGNCNNNNNNGTCCTTCTATGCAGCATAATG
GAACTTCTTACTCTCTGACTGAGGAAAACATCTTGAACGGTCTAGGCTCTGGCTTAGTACAATCAACTATCCTATCTCAA
AATACTGCAGTAGTCCCAGGTGCAGATCCACGGCACAGTGGATATGCCAGCACCTCTACAGCTGACGCTGCTGGTACTTC
TTGTCCTGTAACAGATGGAGTTGGTCCATGGGACTATCCGATTTTCAGTGATCTGTATCCAAATGTAATGTTCCAGGAAC
CGTCAGGACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48020.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis