Browse Element(s) Details


Os.15813.1.S1_at

Description gb:AK062835.1
DB_XREF= gi:32972853
TID=Os.15813.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0070N04.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-G11, full insert sequence.
FL= gb:AK062835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5661011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56560NANA3+32159327..32162255retrotransposon protein, putative, unclassified
LOC_Os03g56566NANA3+32162585..32163992retrotransposon protein, putative, unclassified
LOC_Os03g56572NANA3+32164105..32168709retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g56580Os.17090.1.S1_at11/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56580Os.51926.1.S1_x_at1/113+32173258..32175381NAC-domain containing protein 9, putative, expressed
LOC_Os03g56590Os.45014.1.S1_at8/113+32177135..32179764expressed protein
LOC_Os03g56600Os.15920.1.S1_at1/113+32181481..32182113hypothetical protein
LOC_Os03g56610Os.15813.1.S1_at11/113+32183394..32185758expressed protein
LOC_Os03g56620Os.35191.2.S1_x_at11/113+32187851..32190559expressed protein
LOC_Os03g56630Os.7401.1.S2_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56630Os.7401.1.S1_a_at11/113+32189568..32194089transposon protein, putative, unclassified, expressed
LOC_Os03g56640OsAffx.13508.1.S1_at11/113+32197923..32198531transposon protein, putative, unclassified
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15813.1.S1_at--572--6471Chr03:32183825..32183849 (25 bp)
GATACATGTGAAGAAGCCCGGGAAA
LOC_Os03g56610
Os.15813.1.S1_at--217--2931Chr03:32183775..32183799 (25 bp)
AAGGAAACTGACTGCTTTGTGGGAA
LOC_Os03g56610
Os.15813.1.S1_at--150--5911Chr03:32183746..32183770 (25 bp)
GAGCTCGTGAACTAGGATGGAAACC
LOC_Os03g56610
Os.15813.1.S1_at--372--11Chr03:32183699..32183723 (25 bp)
ACGTAGTAACGAGCCCTAGCGGGAT
LOC_Os03g56610
Os.15813.1.S1_at--142--2151Chr03:32183657..32183681 (25 bp)
ACAGAGATCTAATTCCACACATGCT
LOC_Os03g56610
Os.15813.1.S1_at--194--10691Chr03:32183645..32183669 (25 bp)
TTCCACACATGCTCCTCAAAGATAT
LOC_Os03g56610
Os.15813.1.S1_at--181--9831Chr03:32183604..32183628 (25 bp)
TAACAAAGGTGCGACCTTACCTCCG
LOC_Os03g56610
Os.15813.1.S1_at--171--4771Chr03:32183573..32183597 (25 bp)
GCTGCTTCACAAGCTTTTGTCCATA
LOC_Os03g56610
Os.15813.1.S1_at--861--1191Chr03:32183527..32183551 (25 bp)
AGTATACGTCCATAGCTGTTTGTGA
LOC_Os03g56610
Os.15813.1.S1_at--86--411Chr03:32183479..32183503 (25 bp)
ATCAGAATGCTGCTCATCCACCTGT
LOC_Os03g56610
Os.15813.1.S1_at--11--8231Chr03:32183401..32183425 (25 bp)
GGAATTGTAGTCCAAGTGCATCTAT
LOC_Os03g56610
Target Sequence 
GATACATGTGAAGAAGCCCGGGAAAAATCATCAGAAGCATTGGTTGAACAAAGGAAACTGACTGCTTTGTGGGAAGAAAG
AGCTCGTGAACTAGGATGGAAACCTGGGAATATCAAACCACACCAGACGTAGTAACGAGCCCTAGCGGGATCGCGAGCAG
CTCAAGCCACAGAGATCTAATTCCACACATGCTCCTCAAAGATATAGTAAAGTGACCGAGGTAACAAAGGTGCGACCTTA
CCTCCGTTTTGCGCTGCTTCACAAGCTTTTGTCCATAGTTGATTTATATTCAGATTGTAGTATACGTCCATAGCTGTTTG
TGAGCATATGTTAAAATGATCATAGGATCAGAATGCTGCTCATCCACCTGTATCTGTATGTCTTGAAGGGAATATTGGTT
GTTGTGTATGATGATGGTAATAAAGGAATTGTAGTCCAAGTGCATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis