Browse Element(s) Details


OsAffx.10434.1.S1_at

Description tigr:9631.m05551
TID=OsAffx.10434.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56660Os.23301.1.S1_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_x_at11/113+32206814..32212187expressed protein
LOC_Os03g56660Os.48020.1.S1_at10/113+32206814..32212187expressed protein
LOC_Os03g56670Os.12283.1.S1_at11/113+32211866..32213110Photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
LOC_Os03g56676NANA3+32222755..32226996retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g56682NANA3+32227675..32228405hypothetical protein
LOC_Os03g56690OsAffx.10434.1.S1_at11/113+32230883..32231638hypothetical protein
LOC_Os03g56700OsAffx.25737.1.S1_at11/113+32246007..32247298expressed protein
LOC_Os03g56700OsAffx.25737.1.S1_x_at11/113+32246007..32247298expressed protein
LOC_Os03g56710OsAffx.25738.1.S1_at11/113+32252333..32255041hypothetical protein
LOC_Os03g56710OsAffx.25738.2.S1_x_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.1.S1_at1/113+32252333..32255041hypothetical protein
LOC_Os03g56710Os.26576.2.S1_x_at1/113+32252333..32255041hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10434.1.S1_at--939--10011Chr03:32230920..32230944 (25 bp)
TAGCATTTCTCTCACACCAAAGTTC
LOC_Os03g56690
OsAffx.10434.1.S1_at--23--1711Chr03:32230935..32230959 (25 bp)
ACCAAAGTTCTCAGGCTATTAGGAT
LOC_Os03g56690
OsAffx.10434.1.S1_at--813--10451Chr03:32230988..32231012 (25 bp)
TTACGCGGCGTGTGTAGCATCCAAG
LOC_Os03g56690
OsAffx.10434.1.S1_at--143--4991Chr03:32231004..32231352 (25 bp)
GCATCCAAGATGATCCTGAGCCAGG
LOC_Os03g56690
OsAffx.10434.1.S1_at--184--1671Chr03:32231346..32231370 (25 bp)
AGCCAGGTAAGGATATCTCGGGAAA
LOC_Os03g56690
OsAffx.10434.1.S1_at--1052--1331Chr03:32231377..32231401 (25 bp)
AGAGTCGGACGAAGCCATATGGGCC
LOC_Os03g56690
OsAffx.10434.1.S1_at--796--271Chr03:32231393..32231417 (25 bp)
ATATGGGCCTTGTACGAGCGCTGGT
LOC_Os03g56690
OsAffx.10434.1.S1_at--746--671Chr03:32231453..32231477 (25 bp)
ATGACTCGCTGGTTCGAGATGTTCA
LOC_Os03g56690
OsAffx.10434.1.S1_at--617--10471Chr03:32231517..32231541 (25 bp)
TTACTTCGGAAGCAGAGCAACTAAT
LOC_Os03g56690
OsAffx.10434.1.S1_at--474--5951Chr03:32231531..32231555 (25 bp)
GAGCAACTAATTTTGGGTCCGTACT
LOC_Os03g56690
OsAffx.10434.1.S1_at--66--8631Chr03:32231544..32231568 (25 bp)
TGGGTCCGTACTGCGATGGGTTCAA
LOC_Os03g56690
Target Sequence 
TAGCATTTCTCTCACACCAAAGTTCTCAGGCTATTAGGATTATTAGGGATTTTAGAGATCTTATGGGGTTACGCGGCGTG
TGTAGCATCCAAGATGATCCTGAGCCAGGTAAGGATATCTCGGGAAAAGACTTAGAGTCGGACGAAGCCATATGGGCCTT
GTACGAGCGCTGGTGCGAGGCTTACGAGAAAGAGCGTGACCATGCTGAGATGACTCGCTGGTTCGAGATGTTCAAGAACA
ATGCAGAGTATATTTATAGTCTCAACAGTGAGATTACTTCGGAAGCAGAGCAACTAATTTTGGGTCCGTACTGCGATGGG
TTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis