Browse Element(s) Details


Os.12288.1.S1_at

Description gb:AB110604.1
DB_XREF= gi:40645467
GEN=OsXRT5
TID=Os.12288.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12288 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan endotransglycosylase-related protein 5, complete cds.
PROD=xyloglucan endotransglycosylase-related protein5
FL= gb:AB110604.1 gb:AK104451.1 gb:AK060654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1392011/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13910Os.56197.1.S1_at7/118+8301435..8305195hypothetical protein
LOC_Os08g13920Os.12288.1.S1_at11/118+8321646..8323055Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13930Os.14234.1.S1_at11/118+8335890..8340226mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os08g13940OsAffx.5808.1.S1_at11/118+8342110..8342613hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12288.1.S1_at--182--5892Chr08:8322604..8322628 (25 bp)
GAGCGCAACTACATGTCCTACAACT
LOC_Os08g13920
Os.12288.1.S1_at--590--7311Chr08:8322672..8322696 (25 bp)
GTGCTACCGCAAGTGATTTTGAACT
LOC_Os08g13920
Os.12288.1.S1_at--247--571Chr08:8322709..8322733 (25 bp)
ATCCTCCTCCATTGATGAGTTCTTG
LOC_Os08g13920
Os.12288.1.S1_at--548--8832Chr08:8322738..8322762 (25 bp)
TGATTTGTAATTGCTTCTTGTTCTT
LOC_Os08g13920
Os.12288.1.S1_at--824--571Chr08:8322814..8322838 (25 bp)
ATCCATTCGTTCTCCATTTGTTACA
LOC_Os08g13920
Os.12288.1.S1_at--616--811Chr08:8322856..8322880 (25 bp)
ATGGTGAATTACTATTGCCGCCAAT
LOC_Os08g13920
Os.12288.1.S1_at--840--10311Chr08:8322884..8322908 (25 bp)
TTTCTTCTTCTTGTTACTCGATCCA
LOC_Os08g13920
Os.12288.1.S1_at--233--151Chr08:8322912..8322936 (25 bp)
ATTACTACTAGAGTTCATCTTGCAC
LOC_Os08g13920
Os.12288.1.S1_at--279--10551Chr08:8322925..8322949 (25 bp)
TTCATCTTGCACAGTTGGGCGGTGT
LOC_Os08g13920
Os.12288.1.S1_at--540--611Chr08:8322989..8323013 (25 bp)
ATGCTGAGCAAGTGAGCACATGCTT
LOC_Os08g13920
Os.12288.1.S1_at--1082--5111Chr08:8323004..8323028 (25 bp)
GCACATGCTTATGCTCTCAGGTATG
LOC_Os08g13920
Target Sequence 
GAGCGCAACTACATGTCCTACAACTACTGCGCCGACGGCTGGCGCTTCCCCCAGGGCTTCCCCGCCGAGTGCTACCGCAA
GTGATTTTGAACTCGNTCGATTCAAATCCTCCTCCATTGATGAGTTCTTGGCAATGATTTGTAATTGCTTCTTGTTCTTG
TTTTCGTCTTCGTCTTCGTCTTCTTCTTCTTGATCCATGTACATTTTGNCATCCATTCGTTCTCCATTTGTTACAGTTAC
NAGAGACAGNTTGATGGTGAATTACTATTGCCGCCAATTTTTTTCTTCTTCTTGTTACTCGATCCAATTATTACTACTAG
AGTTCATCTTGCACAGTTGGGCGGTGTGAAAAACTGAAAAAGAAAAGGGTGTNAAATTTGTTGCTGATGCTGAGCAAGTG
AGCACATGCTTATGCTCTCAGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis