Browse Element(s) Details


Os.12292.1.S1_at

Description gb:AK059434.1
DB_XREF= gi:32969452
TID=Os.12292.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains similarity to 40S ribosomal protein S17 (OSJNBa0015J03.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F09, full insert sequence.
FL= gb:AK059434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2719011/1140S ribosomal protein S17-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27160NANA10+13981717..13982121hypothetical protein
LOC_Os10g27170Os.6364.1.S1_at11/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27170Os.6364.2.S1_at1/1110+13987936..13991930calmodulin-binding family protein, putative, expressed
LOC_Os10g27180Os.7882.1.S1_at11/1110+13994330..13998999hypothetical protein
LOC_Os10g27190Os.12292.1.S1_at11/1110+13999256..1400007940S ribosomal protein S17-4, putative, expressed
LOC_Os10g27200NANA10+14001256..14002210hypothetical protein
LOC_Os10g27210OsAffx.30558.1.S1_at11/1110+14002684..14003387hypothetical protein
LOC_Os10g27220Os.8958.1.S1_x_at11/1110+14010343..14014752Phospholipid-transporting ATPase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12292.1.S1_at--609--4651Chr10:13999699..13999723 (25 bp)
GCGTCGAGCGCCAGCAAGAGGTCTC
LOC_Os10g27190
Os.12292.1.S1_at--193--10011Chr10:13999821..13999845 (25 bp)
TAGCTCTGCGTACTACTGAGTTCTA
LOC_Os10g27190
Os.12292.1.S1_at--1114--9911Chr10:13999834..13999858 (25 bp)
TACTGAGTTCTATGTTTTGTCTTTA
LOC_Os10g27190
Os.12292.1.S1_at--73--1271Chr10:13999877..13999901 (25 bp)
AGATTTTGAACTTAGCCGTGATGAT
LOC_Os10g27190
Os.12292.1.S1_at--414--6291Chr10:13999902..13999926 (25 bp)
GATGCTTTAAGTTACCATGTGTTTT
LOC_Os10g27190
Os.12292.1.S1_at--961--151Chr10:13999937..13999961 (25 bp)
ATTATCTTTTTCTATCGCACTGGTG
LOC_Os10g27190
Os.12292.1.S1_at--111--10771Chr10:13999967..13999991 (25 bp)
TTGAGTGATTCGATATATTACCATG
LOC_Os10g27190
Os.12292.1.S1_at--62--671Chr10:13999989..14000013 (25 bp)
ATGAAATTCCCATATGCTCCTTGTG
LOC_Os10g27190
Os.12292.1.S1_at--37--631Chr10:14000002..14000026 (25 bp)
ATGCTCCTTGTGTTGTAATTGCTTG
LOC_Os10g27190
Os.12292.1.S1_at--173--10811Chr10:14000014..14000038 (25 bp)
TTGTAATTGCTTGTTCATGTGTTCT
LOC_Os10g27190
Os.12292.1.S1_at--997--6911Chr10:14000055..14000079 (25 bp)
GTATGAGTTATATACCTTGCTCTGT
LOC_Os10g27190
Target Sequence 
GCGTCGAGCGCCAGCAAGAGGTCTCCGCGCCGACCTACTCCCGCCCGCCGTACGGTGGCCCCCGCCGCGACCGCGTCTAG
ATCGTCGTCGCCTCTTCGCCGCCGTCGTCGCCATGGCTCGNCTAGCTCTGCGTACTACTGAGTTCTATGTTTTGTCTTTA
GATCTATGGTTGCTTTCAAGATTTTGAACTTAGCCGTGATGATGATGCTTTAAGTTACCATGTGTTTTGGTGGACATGAT
TATCTTTTTCTATCGCACTGGTGAAATCTTGAGTGATTCGATATATTACCATGAAATTCCCATATGCTCCTTGTGTTGTA
ATTGCTTGTTCATGTGTTCTTCAAATTGATGTCTTGGTATGAGTTATATACCTTGCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis