Browse Element(s) Details


Os.12296.1.S1_at

Description gb:AF061577.1
DB_XREF= gi:3126853
GEN=RCABP89
TID=Os.12296.1
CNT=200
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12296 (NCBI UniGene Cluster)
DEF=Oryza sativa chlorophyll ab binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds.
PROD=chlorophyll ab binding protein
FL= gb:AF061577.1 gb:AF022739.1 gb:D00642.1 gb:AK058315.1 gb:AK066762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g396108/11Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39580NANA3+21929885..21933177retrotransposon protein, putative, unclassified
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39602OsAffx.23890.2.S1_x_at11/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.2.S1_at10/113+21950620..21952648hypothetical protein
LOC_Os03g39602OsAffx.23890.4.S1_x_at5/113+21950620..21952648hypothetical protein
LOC_Os03g39610Os.12296.1.S1_at8/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39610Os.28216.3.S1_x_at1/113+21954599..21956069Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os03g39620OsAffx.23962.2.S1_at11/113+21962978..21963847hypothetical protein
LOC_Os03g39629OsAffx.25439.1.S1_at11/113+21965707..21966173hypothetical protein
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0030076cellular_componentlight-harvesting complex
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12296.1.S1_at--801--7731Chr03:21955294..21955318 (25 bp)
GGTGGTGCTCATGGGATTCGTCGAG
LOC_Os03g39610
Os.12296.1.S1_at--1117--9351NONE
TCGACAAGGTGTACCCCAGGCGGCG
NONE
Os.12296.1.S1_at--812--3211NONE
CAAGGTGTACCCCAGGCGGCGCCTT
NONE
Os.12296.1.S1_at--820--1491Chr03:21955600..21955624 (25 bp)
AGCACAACGACACGATCGAGATGGT
LOC_Os03g39610
Os.12296.1.S1_at--182--1311Chr03:21955618..21955642 (25 bp)
AGATGGTGCCAACCAACGTACCATG
LOC_Os03g39610
Os.12296.1.S1_at--792--7271Chr03:21955623..21955647 (25 bp)
GTGCCAACCAACGTACCATGTGTAC
LOC_Os03g39610
Os.12296.1.S1_at--367--2651Chr03:21955628..21955652 (25 bp)
AACCAACGTACCATGTGTACACTTG
LOC_Os03g39610
Os.12296.1.S1_at--238--2591Chr03:21955632..21955656 (25 bp)
AACGTACCATGTGTACACTTGTAGT
LOC_Os03g39610
Os.12296.1.S1_at--245--1851Chr03:21955661..21955685 (25 bp)
ACGCACCGACCCTGCAGTTGCAGTT
LOC_Os03g39610
Os.12296.1.S1_at--62--5091Chr03:21955663..21955687 (25 bp)
GCACCGACCCTGCAGTTGCAGTTGC
LOC_Os03g39610
Os.12296.1.S1_at--564--6391NONE
GATCGAGGAGGATTTTACTTAGCTT
NONE
Target Sequence 
GGTGGTGCTCATGGGATTCGTCGAGGGCTACCGCGTCGGCGGCGGCCCGCTCGGCGAGGGCCTCGACAAGGTGTACCCCA
GGCGGCGCCTTCGACCCATGCTCGGCCTCGCCGANCGACCCTGACACNCTTCGCCGAGCTCAAGGTGAAGGAGNCTCAAG
AACGGCCGCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCATCGAGAACCT
CTTCGACCACGTCGCACCGACCCCGTCGCCAACAACGCCTGGGCATACGCCACCAACTTCNGTCCCCGGCAAGTGANNNN
AGCACAACGACACGATCGAGATGGTGCCAACCAACGTACCATGTGTACACTTGTAGTAGCCACGCACCGACCCTGCAGTT
GCAGTTGCAGCAGTGCATGTATGTATGTACCTTAATTGTGTGTGTGTGTGTGTGATCGATCGAGGAGGATTTTACTTAGC
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis