Browse Element(s) Details


Os.1233.1.S1_at

Description gb:BM038389
DB_XREF= gi:16754010
DB_XREF=U008A02
CLONE=U008A02
TID=Os.1233.1
CNT=16
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative heat shock protein 40 (OSJNBa0086P08.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1376011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13740Os.1229.2.S1_x_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.2.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_at11/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.3.S1_x_at10/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13740Os.1229.1.S1_a_at8/111+7683699..7690591myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g13760Os.1233.1.S1_at11/111+7709161..7714533DnaJ domain containing protein, expressed
LOC_Os01g13770Os.19777.1.A1_at11/111+7714993..7719253Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os01g13780Os.52620.1.S1_at11/111+7721116..7722334expressed protein
LOC_Os01g13800Os.17143.1.S1_at11/111+7735876..7739680Receptor-like protein kinase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1233.1.S1_at--944--9831Chr01:7713978..7714002 (25 bp)
TAAATTCAACATCAGGTTCCCTTCC
LOC_Os01g13760
Os.1233.1.S1_at--823--6691Chr01:7713993..7714017 (25 bp)
GTTCCCTTCCAGGTTGACATCTGAT
LOC_Os01g13760
Os.1233.1.S1_at--188--7551Chr01:7714028..7714052 (25 bp)
GGTTCAAAAGGCTCTTGGGTTCTTG
LOC_Os01g13760
Os.1233.1.S1_at--604--3511Chr01:7714234..7714258 (25 bp)
CATGTGCTATACCATGCTATGGCTT
LOC_Os01g13760
Os.1233.1.S1_at--571--4871Chr01:7714249..7714273 (25 bp)
GCTATGGCTTTTTGATTGCTCTTCC
LOC_Os01g13760
Os.1233.1.S1_at--946--4971Chr01:7714293..7714317 (25 bp)
GCAGGGTACACACAACTACACAAGG
LOC_Os01g13760
Os.1233.1.S1_at--582--7391Chr01:7714317..7714341 (25 bp)
GTGAGGCTCCATTTGGAACCTGTTT
LOC_Os01g13760
Os.1233.1.S1_at--61--8891Chr01:7714318..7714389 (25 bp)
TGAGGCATTACTGCTTCCATATGAA
LOC_Os01g13760
Os.1233.1.S1_at--1103--631Chr01:7714402..7714426 (25 bp)
ATGCATTGCAAGTAGGCACCGCTCT
LOC_Os01g13760
Os.1233.1.S1_at--971--10091Chr01:7714414..7714438 (25 bp)
TAGGCACCGCTCTTGAGTCTGGCAA
LOC_Os01g13760
Os.1233.1.S1_at--284--1071Chr01:7714438..7714462 (25 bp)
AGGGTTATGCCTCCTTTGAATCGCA
LOC_Os01g13760
Target Sequence 
TAAATTCAACATCAGGTTCCCTTCCAGGTTGACATCTGATCAAAAAGCAGGGTTCAAAAGGCTCTTGGGTTCTTGAGCCT
GTTTGAACGAATTTCGTAAAAGTGACTGTGAATATTGGCGGTACCTAGCGAGGTAGATTTCTATTGGTTCTGGGGGACAA
AAGGCAAGAAGTTAGAAAAAAGAAAGATGATTTCATAACATATCAGTAATAGGTTGTTATGTTGTTTTTTATCCCCATAA
TTTANCNNNNGNTTNTGANCATGTGCTATACCATGCTATGGCTTTTTGATTGCTCTTCCTCTTGGCTACCTGCGGGTTGC
AGGGTACACACAACTACACAAGGTGAGGCTCCATTTGGAACCTGTTTTTTTTCTTTAAAATGTATTTCTTGAGGCATTAC
TGCTTCCATATGAATCCTGTAAAATCATGCATTGCAAGTAGGCACCGCTCTTGAGTCTGGCAAGGGTTATGCCTCCTTTG
AATCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis