Browse Element(s) Details


Os.12334.1.S1_x_at

Description gb:AK071249.1
DB_XREF= gi:32981272
TID=Os.12334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088C14, full insert sequence.
FL= gb:AK071249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4445011/1160S ribosomal protein L10a-1, putative, expressed
LOC_Os08g443805/1160S ribosomal protein L10a-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44490NANA8+27846694..27849986retrotransposon protein, putative, unclassified
LOC_Os08g44500NANA8+27850606..27856739retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12334.1.S1_x_at--1020--4912Chr08:27831476..27831500 (25 bp)
GCTTGCCAAGAAGTACCATGCTTTC
LOC_Os08g44450
Os.12334.1.S1_x_at--409--4892Chr08:27831495..27831519 (25 bp)
GCTTTCTTAGCATCAGAGGCCATCA
LOC_Os08g44450
Os.12334.1.S1_x_at--1019--5172Chr08:27832001..27832025 (25 bp)
GCAAGTTCCCTACATTGGTTACTCA
LOC_Os08g44450
Os.12334.1.S1_x_at--234--7892Chr08:27832017..27832041 (25 bp)
GGTTACTCACCAGGAGTCTCTTGAA
LOC_Os08g44450
Os.12334.1.S1_x_at--1021--7411Chr08:27832103..27832127 (25 bp)
GTGTTGCTGTGGGTAACTTGTCAAT
LOC_Os08g44450
Os.12334.1.S1_x_at--70--2292Chr08:27832157..27832181 (25 bp)
AAATGAGCGTCAACTTCCTCGTGTC
LOC_Os08g44450
Os.12334.1.S1_x_at--544--9191Chr08:27832372..27832396 (25 bp)
TGCCTTTACATCAAGAGCACCATGG
LOC_Os08g44450
Os.12334.1.S1_x_at--616--7711Chr08:27832409..27832433 (25 bp)
GGGTGTTCTAAGTTGGTGTGTTCCA
LOC_Os08g44450
Os.12334.1.S1_x_at--347--2451Chr08:27832477..27832501 (25 bp)
AAAATAGACCTGTCGCTCTGGGACC
LOC_Os08g44450
Os.12334.1.S1_x_at--488--5831Chr08:27832498..27832522 (25 bp)
GACCGGCTTTTGTCTGTCAGTGCAA
LOC_Os08g44450
Os.12334.1.S1_x_at--1085--9451Chr08:27832543..27832567 (25 bp)
TCTGGACCTTATTTTTGTAGCGTGT
LOC_Os08g44450
Target Sequence 
GCTTGCCAAGAAGTACCATGCTTTCTTAGCATCAGAGGCCATCATCAAGCAGATTCCTCGTCTCCTTGGTCCTGGTCTCA
ACAAGGCAGGCAAGTTCCCTACATTGGTTACTCACCAGGAGTCTCTTGAATCCAAGGTCAACGAGACGAAAGCTACAGTC
AAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGTGTTGCTGTGGGTAACTTGTCAATGGAGGAGAAGCAGATCCAGCAAAA
CATCCAAATGAGCGTCAACTTCCTCGTGTCCCTTTTGAAAAAGAACTGGCAGAATGTGAGGTGCCTTTACATCAAGAGCA
CCATGGGGAAACCAATCAGGGTGTTCTAAGTTGGTGTGTTCCACCTAGAAGTGAAAAGGATCAGTTGAAACCAAGCTTTT
CCTCTTAAAATAGACCTGTCGCTCTGGGACCGGCTTTTGTCTGTCAGTGCAAGAGAATATATCAAAGAAATATCTGGACC
TTATTTTTGTAGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12334.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis