Browse Element(s) Details


Os.48045.1.S1_at

Description gb:AK071334.1
DB_XREF= gi:32981357
TID=Os.48045.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full insert sequence.
FL= gb:AK071334.1 gb:AK060581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g444204/11125 kDa kinesin-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed
LOC_Os08g44440Os.12998.1.S1_at11/118+27826616..27830199Multiple myeloma tumor-associated protein 2 homolog, putative, expressed
LOC_Os08g44450Os.12334.1.S1_x_at11/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44450Os.12334.2.S1_at5/118+27830358..2783290060S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44460Os.12405.1.S1_at11/118+27833353..27835109expressed protein
LOC_Os08g44460OsAffx.17513.1.S1_at10/118+27833353..27835109expressed protein
LOC_Os08g44470OsAffx.6135.1.S1_s_at11/118+27835512..27837858expressed protein
LOC_Os08g44480Os.33777.1.S1_at11/118+27840180..2784186840S ribosomal protein S25, putative, expressed
LOC_Os08g44480OsAffx.29659.2.S1_s_at10/118+27840180..2784186840S ribosomal protein S25, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48045.1.S1_at--557--3251Chr08:27810447..27810471 (25 bp)
CAACGCTTTCCAGAGCAGCTACAAG
LOC_Os08g44420
Os.48045.1.S1_at--218--1031Chr08:27810282..27810306 (25 bp)
AGGTGCCGAGCAAAGACGCGATCGA
LOC_Os08g44420
Os.48045.1.S1_at--561--6231Chr08:27810239..27810263 (25 bp)
GATGGAGTCCCTGATGGACGAGTTC
LOC_Os08g44420
Os.48045.1.S1_at--1060--9931Chr08:27810199..27810223 (25 bp)
TACGAGCCGAGCAAGGACCGCAGGC
LOC_Os08g44420
Os.48045.1.S1_at--20--1851Chr08:27810109..27810133 (25 bp)
ACGCAATGCAATCTGTCTCTGTGTG
NONE
Os.48045.1.S1_at--996--4491Chr08:27810063..27810087 (25 bp)
GCCGTAAGTAGGTCATCAAATGCTG
NONE
Os.48045.1.S1_at--715--3291Chr08:27810047..27810071 (25 bp)
CAAATGCTGGCTTTTGGTGTCCTTT
NONE
Os.48045.1.S1_at--550--7451Chr08:27810031..27810055 (25 bp)
GTGTCCTTTGGTTGTTGTGGCTCAG
NONE
Os.48045.1.S1_at--184--4431Chr08:27809999..27810023 (25 bp)
GCCAGTCCAGCTTCTTGTTGTGGGT
NONE
Os.48045.1.S1_at--420--7491Chr08:27809980..27810004 (25 bp)
GTGGGTTGCGAGCTATCTCAGCTTC
NONE
Os.48045.1.S1_at--644--6971Chr08:27809909..27809933 (25 bp)
GTACCAATCTGTTGCTTTTCTGTGT
NONE
Target Sequence 
CAACGCTTTCCAGAGCAGCTACAAGGACTACGAGCCGACCGGCGAAACTCCGGTGAGGTCGGAGCCGGAGGTGCCGAGCA
AAGACGCGATCGAGTCGCTGCGAGCGATGCCGATGGAGTCCCTGATGGACGAGTTCCGCGAGAACCACCCCTACGAGCCG
AGCAAGGACCGCAGGCCATCGCTCATCCCTCGCTCGCCGCTCGCCACCATCAACAACTGATGAAAATCCATTGGAAACGC
AACGCAATGCAATCTGTCTCTGTGTGTGTACTAGTGTAATCTTATTAGCCGTAAGTAGGTCATCAAATGCTGGCTTTTGG
TGTCCTTTGGTTGTTGTGGCTCAGTGCCAGTGCCAGTCCAGCTTCTTGTTGTGGGTTGCGAGCTATCTCAGCTTCCCCCG
GCGCCCTTNCCTNNCTTTCTTTCACATTTTATTATTTTGATGTACCAATCTGTTGCTTTTCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis