Browse Element(s) Details


Os.37533.1.S1_at

Description gb:AK065151.1
DB_XREF= gi:32975169
TID=Os.37533.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022O12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002B09, full insert sequence.
FL= gb:AK065151.1 gb:AK099458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4439011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed
LOC_Os08g44400Os.5986.1.S1_at11/118+27805389..27808316Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os08g44410NANA8+27809197..27809775Harpin-induced protein 1 containing protein, expressed
LOC_Os08g44420Os.48045.1.S1_at4/118+27810155..27815928125 kDa kinesin-related protein, putative, expressed
LOC_Os08g44430Os.10833.1.S1_at11/118+27823458..27826135synaptobrevin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37533.1.S1_at--7--5411Chr08:27799761..27799785 (25 bp)
GAAGCTCTACGCAGTCTTGGATATG
LOC_Os08g44390
Os.37533.1.S1_at--347--8711Chr08:27799723..27799747 (25 bp)
TGTCCTTGAGCTTCTTATCGCGAAC
LOC_Os08g44390
Os.37533.1.S1_at--510--1671Chr08:27799680..27799704 (25 bp)
AGCCGTGGCGCGTTGGACTTTGACA
LOC_Os08g44390
Os.37533.1.S1_at--165--3791Chr08:27799365..27799389 (25 bp)
CTCGGCAACTCTTTCATATGACGGG
LOC_Os08g44390
Os.37533.1.S1_at--560--1911Chr08:27799345..27799369 (25 bp)
ACGGGTTCTTGTCAATGGTCATTCC
LOC_Os08g44390
Os.37533.1.S1_at--668--8951Chr08:27799307..27799331 (25 bp)
TGACTTCTTCGGGTGTCTCAAGACC
LOC_Os08g44390
Os.37533.1.S1_at--81--6551Chr08:27799202..27799226 (25 bp)
GATTTTATTGACTCTGTGCCGTACT
LOC_Os08g44390
Os.37533.1.S1_at--479--9951Chr08:27799167..27799191 (25 bp)
TACCATTTTGTTTTCCCTATAGCCT
LOC_Os08g44390
Os.37533.1.S1_at--733--10171Chr08:27799150..27799174 (25 bp)
TATAGCCTATATCGACTGTTACCTG
LOC_Os08g44390
Os.37533.1.S1_at--1041--1951Chr08:27799136..27799160 (25 bp)
ACTGTTACCTGTGATTGCGTCTCGG
LOC_Os08g44390
Os.37533.1.S1_at--146--9511Chr08:27799117..27799141 (25 bp)
TCTCGGTTCTGACATGCTTTGATCT
LOC_Os08g44390
Target Sequence 
GAAGCTCTACGCAGTCTTGGATATGCGGTTCCACCTTCTGTCCTTGAGCTTCTTATCGCGAACTACAACAATGGAGTCTC
CAGCCGTGGCGCGTTGGACTTTGACAACTTTGTGGAGTGTGGAATGATTGTTAAGGGTTTAACTGAAAAATTCAAAGAGA
AGGATACACGCTACAGCGGCTCGGCAACTCTTTCATATGACGGGTTCTTGTCAATGGTCATTCCCTTCATTGTCCCTTGA
CTTCTTCGGGTGTCTCAAGACCCAAAGAGCTTTGAATTTGTACAGCTTTTCAGCTATGTTTCTGCTTCCTAGTTGGATTT
GTTTGTGCAAATAGGCCTTGGTGATTTTATTGACTCTGTGCCGTACTGTGTACTTAGTACCATTTTGTTTTCCCTATAGC
CTATATCGACTGTTACCTGTGATTGCGTCTCGGTTCTGACATGCTTTGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis