Browse Element(s) Details


Os.16444.1.S1_at

Description gb:AY581257.1
DB_XREF= gi:46371871
GEN=HPt1
TID=Os.16444.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16444 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) histidine-containing phosphotransfer protein (HPt1) mRNA, complete cds.
PROD=histidine-containing phosphotransfer protein
FL= gb:AK061111.1 gb:AY581257.1 gb:AY345242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4435011/11Hpt domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44360Os.27379.1.S1_at11/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44360OsAffx.1155.1.S1_at1/118+27783470..27789774Male sterility protein, expressed
LOC_Os08g44370Os.8574.1.S1_at11/118+27785933..27793862Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os08g44380Os.37672.1.S1_at11/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44380Os.12334.1.S1_x_at5/118+27796506..2779983460S ribosomal protein L10a-1, putative, expressed
LOC_Os08g44390Os.37533.1.S1_at11/118+27798872..27801533EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16444.1.S1_at--687--3571Chr08:27771948..27771972 (25 bp)
CATATAAATCACACCCGTCGCATCG
LOC_Os08g44350
Os.16444.1.S1_at--53--251Chr08:27771949..27771973 (25 bp)
ATATAAATCACACCCGTCGCATCGC
LOC_Os08g44350
Os.16444.1.S1_at--556--10651Chr08:27772043..27772067 (25 bp)
TTCCCGATCGGAGTGAGGAGCTCGC
LOC_Os08g44350
Os.16444.1.S1_at--393--4051Chr08:27772047..27772071 (25 bp)
CGATCGGAGTGAGGAGCTCGCCGCT
LOC_Os08g44350
Os.16444.1.S1_at--104--5051Chr08:27776263..27776287 (25 bp)
GCAGCAAATCCAAGCTTGTTACCCT
LOC_Os08g44350
Os.16444.1.S1_at--692--5131Chr08:27776266..27776290 (25 bp)
GCAAATCCAAGCTTGTTACCCTAAA
LOC_Os08g44350
Os.16444.1.S1_at--218--3031Chr08:27776269..27776293 (25 bp)
AATCCAAGCTTGTTACCCTAAACAT
LOC_Os08g44350
Os.16444.1.S1_at--792--9191Chr08:27776271..27776295 (25 bp)
TCCAAGCTTGTTACCCTAAACATTA
LOC_Os08g44350
Os.16444.1.S1_at--164--10471Chr08:27776281..27776305 (25 bp)
TTACCCTAAACATTAAACTGGCGCG
LOC_Os08g44350
Os.16444.1.S1_at--947--4271Chr08:27776285..27776309 (25 bp)
CCTAAACATTAAACTGGCGCGACAG
LOC_Os08g44350
Os.16444.1.S1_at--693--2391Chr08:27776288..27776312 (25 bp)
AAACATTAAACTGGCGCGACAGTGG
LOC_Os08g44350
Target Sequence 
CATATAAATCACACCCGTCGCATCGCTCCGATTCCCAATCCCCACGCTTCCATTCCATCCATCTCTCTCGCTCTCTCGCT
TGCTCGCCCCGCCGNTTCCCGATCGGAGTGAGGAGCTCGCCGCTGCTGCTTGCCATGGCGGCCGCCGCGCTGACCAGCCA
GCTCAACGCCCTCGTCAACAACATGTTCGCCATGGGTTTGCTGGACGACCAGTTCCAGCAGCTGCAGATGCTGCAGGACT
CCACCGCGCCGGACTTCGTCTCCGAGGTCGTCACGCTCTTCTGCGACGACGGCGAGCGGATCATCTGCGAGCTCNCCAGG
CAGCTGGAGAAGCCAAATGTGGATTTTGACAGGGTGGACTCGTATGTGCATCAGCTCAAGGGGAGCAGCGCAAGTGTTGG
TGCTCAGAAAGTGAAGAACACTTGCATTCAGTTCCGTGAGTTTTGCCANCAGAGGAGCAGAGATGGGTGCCTCAAGACTT
TGGATTTGGTGAGGACTGAATTCTATGATCTTCGTAACAAGTTTCAGGCTATGCTTCAGCTGGAGCAGCAAATCCAAGCT
TGTTACCCTAAACATTAAACTGGCGCGACAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis