Browse Element(s) Details


Os.17609.1.S1_at

Description gb:AK108300.1
DB_XREF= gi:32993509
TID=Os.17609.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-E12, full insert sequence.
FL= gb:AK108300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g443008/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17609.1.S1_at--221--8651Chr08:27751316..27751340 (25 bp)
TGGGCAGCACAGACATGCGGCTCCA
LOC_Os08g44300
Os.17609.1.S1_at--283--9111Chr08:27751243..27751267 (25 bp)
TGCTGCCGCCATTGTGCTAATGCAA
LOC_Os08g44300
Os.17609.1.S1_at--503--5191Chr08:27751204..27751228 (25 bp)
GCAATGTGATTGACAGCACGTTTCA
LOC_Os08g44300
Os.17609.1.S1_at--601--5091Chr08:27751189..27751213 (25 bp)
GCACGTTTCATGCATCCCTAAAAAA
LOC_Os08g44300
Os.17609.1.S1_at--419--1111Chr08:27751155..27751179 (25 bp)
AGTGTCCAATTGATGTCTCGTCGTC
LOC_Os08g44300
Os.17609.1.S1_at--1003--4011Chr08:27751134..27751158 (25 bp)
CGTCGTCCATGTCGCGCGGTTAGAA
LOC_Os08g44300
Os.17609.1.S1_at--479--7651Chr08:27751051..27751074 (24 bp)
GGGATGCGGTGTTGACCAGTCCAAA
LOC_Os08g44300
Os.17609.1.S1_at--124--8931NONE
TGACCAGTCCAAATTATCCGCGTGT
NONE
Os.17609.1.S1_at--450--10151NONE
TATCCGCGTGTAATTTTGCTATATA
NONE
Os.17609.1.S1_at--1098--8891NONE
TGAGATGATTCGTCCTTACGACCTC
NONE
Os.17609.1.S1_at--929--4536Chr11:28360570..28360589 (20 bp)
GACCTCCGTTTCACCGAAATAATAT
NONE
Target Sequence 
TGGGCAGCACAGACATGCGGCTCCAGCTCCACTCCCCAGTGACTGAGCTCAGCTAGCTAAGCTAAATCCNCTCTGCTGCC
GCCATTGTGCTAATGCAACTGTTGTAATAGTGGCAATGTGATTGACAGCACGTTTCATGCATCCCTAAAAAAAAATAATC
TAGTGTCCAATTGATGTCTCGTCGTCGTCCATGTCGCGCGGTTAGAAATCAAAGTCGTTCCGAGGAGGAAGACGAGAGGC
GGCGTGGGCCCGGTTCGGCATAGAGGGGGATGCGGTGTTGACCAGTCCAAATTATCCGCGTGTAATTTTGCTATATATTT
ATCAATAATTTTTCTCTAAAAAATAATAAATGTTGTAAATTGCATGTAACTATAATGTAACTTTTATATAACTTTCATGT
AATTTTGAACCGTTATATTTGTTTCAAGATTTGTGCAACAGTGCAAGTGAGGAATTAAAAGTCACGGCGTGTATACATGT
GAGATGATTCGTCCTTACGACCTCCGTTTCACCGAAATAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis