Browse Element(s) Details


Os.6831.1.S1_a_at

Description gb:AK070743.1
DB_XREF= gi:32980766
TID=Os.6831.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062K14, full insert sequence.
FL= gb:AK105901.1 gb:AK070743.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4429011/1128 kDa ribonucleoprotein, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed
LOC_Os08g44350Os.16444.1.S1_at11/118+27771759..27776711Hpt domain containing protein, expressed
LOC_Os08g44350Os.16444.1.S1_s_at11/118+27771759..27776711Hpt domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6831.1.S1_a_at--378--2931Chr08:27748137..27748161 (25 bp)
AAGGCAGTTTGCTCCTGCTTTCAGG
LOC_Os08g44290
Os.6831.1.S1_a_at--204--4891Chr08:27748121..27748145 (25 bp)
GCTTTCAGGGCTTATGTTGGCAACC
LOC_Os08g44290
Os.6831.1.S1_a_at--868--7511Chr08:27748085..27748109 (25 bp)
GTGGATGACTCTAGGCTGCTGCAAT
LOC_Os08g44290
Os.6831.1.S1_a_at--221--6771Chr08:27748037..27748061 (25 bp)
GTTAACGCTTCGGTTGTCTACGATA
LOC_Os08g44290
Os.6831.1.S1_a_at--201--5651Chr08:27747787..27747810 (24 bp)
GACAGGAATTGGATGGCCGCCCACT
LOC_Os08g44290
Os.6831.1.S1_a_at--251--3311Chr08:27747736..27747760 (25 bp)
CACAGCGAGGCTTTTGATTCCATAT
LOC_Os08g44290
Os.6831.1.S1_a_at--348--8071Chr08:27747703..27747727 (25 bp)
GGAGCATGTCTGCACGTTTGAACAA
LOC_Os08g44290
Os.6831.1.S1_a_at--759--10711Chr08:27747639..27747663 (25 bp)
TTGTCATTTACAGAGCGCGCGTTAG
LOC_Os08g44290
Os.6831.1.S1_a_at--21--6791Chr08:27747619..27747643 (25 bp)
GTTAGCTTCCTGATTTTGAGTCCTC
LOC_Os08g44290
Os.6831.1.S1_a_at--599--7451Chr08:27747581..27747605 (25 bp)
GTGTCTTCCAAGCTGATGTTATGTT
LOC_Os08g44290
Os.6831.1.S1_a_at--970--1211Chr08:27747466..27747490 (25 bp)
AGTTCACTTGTCGACCATATATCTG
LOC_Os08g44290
Target Sequence 
AAGGCAGTTTGCTCCTGCTTTCAGGGCTTATGTTGGCAACCTGCCATGGCAAGTGGATGACTCTAGGCTGCTGCAATTGT
TCAGCGAGCATGGAGAGGTGGTTAACGCTTCGGTTGTCTACGATAGAGAATCTGGGCGTTCTCGGGGATTTGGTTTTGTT
TCCATGGCCTCCAAGGAGGAGCTCGATGATGCTATTTCTGCCCTTGATGGACAGGAATTGGATGGCCGCCCACTTCGAGT
GAATGTGGCAGCTGAGCGACCACAGCGAGGCTTTTGATTCCATATGGCGTTGGGGAGCATGTCTGCACGTTTGAACAAGA
ATGCTAAAGTGTTATGCGTTAAGGCGGAAGCTGATGGTTGTCATTTACAGAGCGCGCGTTAGCTTCCTGATTTTGAGTCC
TCCCGTCCTNTTTATGTGTCTTCCAAGCTGATGTTATGTTAAATTATTCTCAAAAATATGAGTTCAACTTTCCAAGTAGG
ATATTTATAATGATGATGTCCTTAGTATTTTTTTTCCGTGNATAATCCAAAAGTTCACTTGTCGACCATATATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6831.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis