Browse Element(s) Details


Os.12077.1.S1_at

Description gb:AK099308.1
DB_XREF= gi:32984517
TID=Os.12077.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144C09, full insert sequence.
FL= gb:AK099308.1 gb:AK105612.1 gb:AK072235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4427011/11Vignain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44240Os.26966.1.A1_at11/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44240Os.56976.1.S1_at1/118+27716200..27723382peroxisome biogenesis protein, putative, expressed
LOC_Os08g44250Os.12763.3.S1_at11/118+27723997..27725670Fb14, putative, expressed
LOC_Os08g44260Os.18764.1.S1_at11/118+27726154..27735474myotubularin related protein, putative, expressed
LOC_Os08g44270Os.12077.1.S1_at11/118+27742299..27743739Vignain precursor, putative, expressed
LOC_Os08g44280Os.6204.1.S1_at10/118+27744500..27747204Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os08g44290Os.6831.1.S1_a_at11/118+27747410..2774934128 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os08g44300Os.17609.1.S1_at8/118+27750800..27752607retrotransposon protein, putative, unclassified, expressed
LOC_Os08g44310NANA8+27755093..27755995expressed protein
LOC_Os08g44320Os.50998.1.S1_at11/118+27756064..27760195Low molecular weight phosphotyrosine protein phosphatase containing protein, expressed
LOC_Os08g44330Os.13002.1.S1_at11/118+27760523..27765988peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g44340Os.9749.1.S1_at11/118+27766968..27770278Monodehydroascorbate reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12077.1.S1_at--568--7991Chr08:27743367..27743391 (25 bp)
GGATGAAGCGCGACGTGTCCGCCAA
LOC_Os08g44270
Os.12077.1.S1_at--712--5751Chr08:27743378..27743402 (25 bp)
GACGTGTCCGCCAAGGAGGGACTCT
LOC_Os08g44270
Os.12077.1.S1_at--686--831Chr08:27743414..27743438 (25 bp)
ATGGAAGCATCCTACCCCATCAAGA
LOC_Os08g44270
Os.12077.1.S1_at--200--1711Chr08:27743517..27743541 (25 bp)
ACCACGACGAACTCTAAGCTCATTT
LOC_Os08g44270
Os.12077.1.S1_at--366--2571Chr08:27743563..27743587 (25 bp)
AACTGGCTACCGTTTGGAGGCGATT
LOC_Os08g44270
Os.12077.1.S1_at--778--891Chr08:27743580..27743604 (25 bp)
AGGCGATTGATCGACGTCGTAACAA
LOC_Os08g44270
Os.12077.1.S1_at--370--5031Chr08:27743610..27743634 (25 bp)
GCAGTTCGTTAATTTAATCACCTGT
LOC_Os08g44270
Os.12077.1.S1_at--860--9671Chr08:27743627..27743651 (25 bp)
TCACCTGTAGTTGATTTGATTGCAT
LOC_Os08g44270
Os.12077.1.S1_at--484--10791Chr08:27743642..27743666 (25 bp)
TTGATTGCATGCTCGTATTTTTTGC
LOC_Os08g44270
Os.12077.1.S1_at--558--4031Chr08:27743655..27743679 (25 bp)
CGTATTTTTTGCAATCTAGCTCGAT
LOC_Os08g44270
Os.12077.1.S1_at--214--4811Chr08:27743673..27743697 (25 bp)
GCTCGATTATGTTTACGCTGTGTAA
LOC_Os08g44270
Target Sequence 
GGATGAAGCGCGACGTGTCCGCCAAGGAGGGACTCTGCGGCATCGCCATGGAAGCATCCTACCCCATCAAGACCTCGCCG
AACCCGGCGCCCAAGAAGATCAAGAAGGTCACCGACGACGACGAAGATGATGATGACGAGGAGCACCGCCACCACGACGA
ACTCTAAGCTCATTTAATTGTGTGTTTTACAACAGTAACTGGCTACCGTTTGGAGGCGATTGATCGACGTCGTAACAAAA
TAAGCAGTTCGTTAATTTAATCACCTGTAGTTGATTTGATTGCATGCTCGTATTTTTTGCAATCTAGCTCGATTATGTTT
ACGCTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis