Browse Element(s) Details


Os.12596.1.S1_at

Description gb:AK067896.1
DB_XREF= gi:32977914
TID=Os.12596.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123D20, full insert sequence.
FL= gb:AK067896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3970010/1160S ribosomal protein L6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39700Os.12596.1.S1_at10/114+23441736..2344394060S ribosomal protein L6, putative, expressed
LOC_Os04g39710NANA4+23445325..23449908transposon protein, putative, unclassified
LOC_Os04g39720Os.28943.1.S1_x_at4/114+23451612..23454727retrotransposon protein, putative, unclassified
LOC_Os04g39730NANA4+23455586..23461574retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g39740NANA4+23463705..23469031retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12596.1.S1_at--966--3712Chr06:26528818..26528948 (25 bp)
CTACGTCATTGCTACGTCCACAAAG
NONE
Os.12596.1.S1_at--996--1891Chr04:23442291..23442315 (25 bp)
ACGTCCACAAAGGTTGATATCTCTG
LOC_Os04g39700
Os.12596.1.S1_at--1113--6191Chr04:23442080..23442103 (24 bp)
GAGGCAACCAAGAACCTGCCGGAGT
LOC_Os04g39700
Os.12596.1.S1_at--1100--7971Chr04:23442030..23442054 (25 bp)
GGATGCCGAGTTGATCAAAGCTATT
LOC_Os04g39700
Os.12596.1.S1_at--737--2351Chr04:23442014..23442038 (25 bp)
AAAGCTATTGAAGCTGTCCCGGATC
LOC_Os04g39700
Os.12596.1.S1_at--435--1511Chr04:23442003..23442027 (25 bp)
AGCTGTCCCGGATCTGAAAACTTAC
LOC_Os04g39700
Os.12596.1.S1_at--367--8971Chr04:23441989..23442013 (25 bp)
TGAAAACTTACCTTGGTGCGCGGTT
LOC_Os04g39700
Os.12596.1.S1_at--720--2651Chr04:23441945..23441969 (25 bp)
AAGCCCCACGAGATGGTTTTCTAGA
LOC_Os04g39700
Os.12596.1.S1_at--234--10451Chr04:23441920..23441944 (25 bp)
TTAGTTGGCGCTAGGCTCTAGTTCT
LOC_Os04g39700
Os.12596.1.S1_at--307--10051Chr04:23441902..23441926 (25 bp)
TAGTTCTGAAGCCACTTTGCCTGTT
LOC_Os04g39700
Os.12596.1.S1_at--1005--331Chr04:23441736..23441760 (25 bp)
ATACACATAAGCCATTTTGCCACTG
NONE
Target Sequence 
CTACGTCATTGCTACGTCCACAAAGGTTGATATCTCTGGTGTTAATGTGGAGAAGTTTGATGACAAGTACTTCTCTAGGG
ACAAGAAGCAGAAGGCGAAGAAGACCGAGGGTGAACTTTTTGAGACTGAGAAGGAGGCAACCAAGAACCTGCCGGAGTTC
AAAAAGGAGGACCAGAAAGTTGTGGATGCCGAGTTGATCAAAGCTATTGAAGCTGTCCCGGATCTGAAAACTTACCTTGG
TGCGCGGTTTTCTCTCAGGGACGGCGACAAGCCCCACGAGATGGTTTTCTAGATTAGTTGGCGCTAGGCTCTAGTTCTGA
AGCCACTTTGCCTGTTCAACCTCAGTGCGCTCTTGAATTTTGTATCTGACTGGTGAACCATTCGTTTCCATTAGTATCTG
TCTGTCAAATCTTACCTGAAGTCTTATACACTTTGCTGGGTTCAATTTAGTGATNTTCTGCATCATACATTCATACTATA
CACATAAGCCATTTTGCCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis