Browse Element(s) Details


Os.56469.1.S1_at

Description gb:AK110053.1
DB_XREF= gi:32995262
TID=Os.56469.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-D01, full insert sequence.
FL= gb:AK110053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3968010/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed
LOC_Os04g39650OsAffx.26391.1.S1_at11/114+23407634..23410685Leucine Rich Repeat family protein, expressed
LOC_Os04g39660Os.27136.1.S1_at11/114+23410961..23412867F-box domain containing protein, expressed
LOC_Os04g39670OsAffx.26392.1.S1_at11/114+23413318..23416172expressed protein
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39700Os.12596.1.S1_at10/114+23441736..2344394060S ribosomal protein L6, putative, expressed
LOC_Os04g39710NANA4+23445325..23449908transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56469.1.S1_at--641--5751Chr04:23424144..23424168 (25 bp)
GACGGTGGCCGGGAGGATCCAGGCG
LOC_Os04g39680
Os.56469.1.S1_at--393--1631Chr04:23424197..23424221 (25 bp)
AGCGGGTGCGGTCGCTGCTGGCGTG
LOC_Os04g39680
Os.56469.1.S1_at--474--10571Chr04:23424379..23424403 (25 bp)
TTCTTCAAGAGGCTGCCGTCCCGCG
LOC_Os04g39680
Os.56469.1.S1_at--10--2791Chr04:23424385..23424409 (25 bp)
AAGAGGCTGCCGTCCCGCGCCGATA
LOC_Os04g39680
Os.56469.1.S1_at--768--4151Chr04:23424400..23424424 (25 bp)
CGCGCCGATACCATGCTATAGTATA
LOC_Os04g39680
Os.56469.1.S1_at--591--3691Chr04:23424415..23424439 (25 bp)
CTATAGTATATGATGCGTCGTTTCT
LOC_Os04g39680
Os.56469.1.S1_at--208--10131Chr04:23424423..23424447 (25 bp)
TATGATGCGTCGTTTCTTGTGTCTT
LOC_Os04g39680
Os.56469.1.S1_at--269--9151Chr04:23424428..23424452 (25 bp)
TGCGTCGTTTCTTGTGTCTTATGAT
LOC_Os04g39680
Os.56469.1.S1_at--742--4031Chr04:23424433..23424457 (25 bp)
CGTTTCTTGTGTCTTATGATGTTAT
LOC_Os04g39680
Os.56469.1.S1_at--306--10371Chr04:23424467..23424491 (25 bp)
TTTTTCTTGTAATTCATCGCCAATG
LOC_Os04g39680
Os.56469.1.S1_at--633--7071NONE
GTAATTCATCGCCAATGATGCCTGC
NONE
Target Sequence 
GACGGTGGCCGGGAGGATCCAGGCGGTGGTCAGCGACGTGGCGACGCAGGGGGAGCGGGTGCGGTCGCTGCTGGCGTGGA
GGGACCCGAGGGCGACGGCGGTGTTCACGGCGGCCTGCCTCGCCGCCGCCGTCGTGGCGTACGCCACGCCGCCCCGGGTG
GTGGCGCTCGTCGCCGGGCTGTACCTGCTCCGCCACCCGCGGTTCCGGAGCCGGATGCCGTCGGCCGCCGGCAACTTCTT
CAAGAGGCTGCCGTCCCGCGCCGATACCATGCTATAGTATATGATGCGTCGTTTCTTGTGTCTTATGATGTTATAAAACT
TTTTTTTTCTTGTAATTCATCGCCAATGATGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis