Browse Element(s) Details


Os.18684.1.S1_at

Description gb:CB643005
DB_XREF= gi:29637996
DB_XREF=OSJNEb03H14.r
CLONE=OSJNEb03H14
TID=Os.18684.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18684 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566430.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3962911/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39580OsAffx.14207.1.S1_at11/114+23377363..23377743hypothetical protein
LOC_Os04g39590OsAffx.14208.1.S1_at11/114+23378994..23380162Fasciclin domain containing protein
LOC_Os04g39600Os.5963.1.S1_at11/114+23380441..23381606Fasciclin domain containing protein, expressed
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed
LOC_Os04g39650OsAffx.26391.1.S1_at11/114+23407634..23410685Leucine Rich Repeat family protein, expressed
LOC_Os04g39660Os.27136.1.S1_at11/114+23410961..23412867F-box domain containing protein, expressed
LOC_Os04g39670OsAffx.26392.1.S1_at11/114+23413318..23416172expressed protein
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18684.1.S1_at--151--371Chr04:23404152..23404176 (25 bp)
ATAATGCTGATACTGTCGATGCGGC
LOC_Os04g39629
Os.18684.1.S1_at--887--7211Chr04:23404166..23404190 (25 bp)
GTCGATGCGGCAAAACCTGGTCACA
LOC_Os04g39629
Os.18684.1.S1_at--694--311Chr04:23404199..23404223 (25 bp)
ATACCTACCGGTAATCAGTTGATAA
LOC_Os04g39629
Os.18684.1.S1_at--607--351Chr04:23404220..23404244 (25 bp)
ATAAGCCCAGTTGTGCGGAGCTTCA
LOC_Os04g39629
Os.18684.1.S1_at--257--10531Chr04:23404241..23404265 (25 bp)
TTCACCTACACACGTGCTGAGCAAA
LOC_Os04g39629
Os.18684.1.S1_at--337--2411Chr04:23404263..23404287 (25 bp)
AAAAACAGGACGTTGGTGCGACCAT
LOC_Os04g39629
Os.18684.1.S1_at--247--5551Chr04:23404303..23404327 (25 bp)
GAAACTCGCAGAAAGACCTCAGAAT
LOC_Os04g39629
Os.18684.1.S1_at--84--3131Chr04:23404413..23404437 (25 bp)
AATTTGAGCCATGTTCTGTGACCAG
LOC_Os04g39629
Os.18684.1.S1_at--462--10611Chr04:23404426..23404450 (25 bp)
TTCTGTGACCAGTTTTGTGTGCTTT
LOC_Os04g39629
Os.18684.1.S1_at--735--10251Chr04:23404439..23404463 (25 bp)
TTTGTGTGCTTTTTTCCGGCCATCG
LOC_Os04g39629
Os.18684.1.S1_at--891--8631Chr04:23404546..23404570 (25 bp)
TGGGAACACCGCAACATTTAATATT
LOC_Os04g39629
Target Sequence 
ATAATGCTGATACTGTCGATGCGGCAAAACCTGGTCACAGCACACCTATACCTACCGGTAATCAGTTGATAAGCCCAGTT
GTGCGGAGCTTCACCTACACACGTGCTGAGCAAAAACAGGACGTTGGTGCGACCATNTTGACTGCTCCTGATGAAACTCG
CAGAAAGACCTCAGAATTAGTGTTATCTCATAGTTCCTCCTCNNNTCGTAAATACTATTTATTTAGTTGCAGAGCTTAGT
AACANGGCTGGTTTTTGGAACTGAATTTGAGCCATGTTCTGTGACCAGTTTTGTGTGCTTTTTTCCGGCCATCGCTCATG
CTGTGCTGGNTACGCGAAGTTTGTGGATTGAAAAATCAGGGAAAAAAGAAAGGAAAGTAAAGGTTGTAGAATATGATGGG
AACACCGCAACATTTAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis