Browse Element(s) Details


Os.5963.1.S1_at

Description gb:AK110545.1
DB_XREF= gi:32995754
TID=Os.5963.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B08, full insert sequence.
FL= gb:AK110545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3960011/11Fasciclin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39570Os.50644.2.S1_x_at7/114+23360738..23368089WRKY DNA binding domain containing protein, expressed
LOC_Os04g39580OsAffx.14207.1.S1_at11/114+23377363..23377743hypothetical protein
LOC_Os04g39590OsAffx.14208.1.S1_at11/114+23378994..23380162Fasciclin domain containing protein
LOC_Os04g39600Os.5963.1.S1_at11/114+23380441..23381606Fasciclin domain containing protein, expressed
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5963.1.S1_at--784--4591Chr04:23381003..23381027 (25 bp)
GCGAAGCTCGTCAGCAGCGTGTACT
LOC_Os04g39600
Os.5963.1.S1_at--430--1611Chr04:23380988..23381012 (25 bp)
AGCGTGTACTCGACGTCGCCCGTGG
LOC_Os04g39600
Os.5963.1.S1_at--307--9111Chr04:23380939..23380963 (25 bp)
TGCTGCCGGAGCAGATCTTCCCGAC
LOC_Os04g39600
Os.5963.1.S1_at--623--5911Chr04:23380834..23380853 (20 bp)
GAGCTTGGCGCCTCGGACGTTAAGA
LOC_Os04g39600
Os.5963.1.S1_at--503--9491Chr04:23380773..23380797 (25 bp)
TCTCGCCATCTTGGCTGTAATGGTA
LOC_Os04g39600
Os.5963.1.S1_at--667--2971Chr04:23380755..23380779 (25 bp)
AATGGTATCCAGTTTTTCTGATGAT
LOC_Os04g39600
Os.5963.1.S1_at--869--10391Chr04:23380709..23380733 (25 bp)
TTTTGGCGTGGGTACATATATACAG
LOC_Os04g39600
Os.5963.1.S1_at--712--231Chr04:23380694..23380718 (25 bp)
ATATATACAGTACTTCCCTCGTTTC
LOC_Os04g39600
Os.5963.1.S1_at--826--6811Chr04:23380522..23380546 (25 bp)
GTTTTTTGTCAATTCGTTTGTCGCA
LOC_Os04g39600
Os.5963.1.S1_at--1158--9391Chr04:23380509..23380533 (25 bp)
TCGTTTGTCGCATCTCTGTATGTAA
LOC_Os04g39600
Os.5963.1.S1_at--101--5131Chr04:23380459..23380483 (25 bp)
GCAAATAACATTTTCTGGCAGTTTA
LOC_Os04g39600
Target Sequence 
GCGAAGCTCGTCAGCAGCGTGTACTCGACGTCGCCCGTGGCGGTGTACGCGCTGAACAGGGTGCTGCTGCCGGAGCAGAT
CTTCCCGACCGCCCCTAAGGTCGCACCCGTGCCGGCCCCGGCCCCGGCGCCGGTGCACGGGGACAAGGCGAACGACGGCG
CACCGGGCGCAGGCGAGCTTGGCGCCTCGGACGTTAAGAGTTCGTCGTGCCGGGTTGGCGCCGGGCGCCTTCTCGCCATC
TTGGCTGTAATGGTATCCAGTTTTTCTGATGATATAGTGGTGTGATTTTTTTTTTTTTGGCGTGGGTACATATATACAGT
ACTTCCCTCGTTTCATAATGTAATACTTTCTACCATTAACCACATTCATTTAGATGTTAATGAATCTAGACATATGCATG
TATTTAGATTCATTAACATTTATATGTATGTGGGCAATGGTAAAAAGTCTTACATTGTGAAACGGAGGGAGTAATGTTTA
TGTTTTTTGTCAATTCGTTTGTCGCATCTCTGTATGTAAACATTCATTTTGCATGAACATATCTGCAAATAACATTTTCT
GGCAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis