Browse Element(s) Details


OsAffx.14207.1.S1_at

Description tigr:9632.m03753
TID=OsAffx.14207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3958011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39570Os.50644.2.S1_x_at7/114+23360738..23368089WRKY DNA binding domain containing protein, expressed
LOC_Os04g39580OsAffx.14207.1.S1_at11/114+23377363..23377743hypothetical protein
LOC_Os04g39590OsAffx.14208.1.S1_at11/114+23378994..23380162Fasciclin domain containing protein
LOC_Os04g39600Os.5963.1.S1_at11/114+23380441..23381606Fasciclin domain containing protein, expressed
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14207.1.S1_at--98--9151Chr04:23377381..23377405 (25 bp)
TGCGTGTGCGCGAAGCCGCCAACTG
LOC_Os04g39580
OsAffx.14207.1.S1_at--883--1771Chr04:23377424..23377448 (25 bp)
ACCGGTTGCGCGGTGAGCGTACTAC
LOC_Os04g39580
OsAffx.14207.1.S1_at--974--2171Chr04:23377497..23377521 (25 bp)
ACACGGAGACCGACGTGCACGTAGA
LOC_Os04g39580
OsAffx.14207.1.S1_at--435--1911Chr04:23377509..23377533 (25 bp)
ACGTGCACGTAGAGCGATGGGCCTC
LOC_Os04g39580
OsAffx.14207.1.S1_at--345--4631Chr04:23377546..23377570 (25 bp)
GCGATTCATCAAGCCCGATGCTGGG
LOC_Os04g39580
OsAffx.14207.1.S1_at--576--3971Chr04:23377601..23377625 (25 bp)
CGGTACGGCCTATGCCACGGAAGAG
LOC_Os04g39580
OsAffx.14207.1.S1_at--72--10131Chr04:23377611..23377635 (25 bp)
TATGCCACGGAAGAGGCCTGTGCCG
LOC_Os04g39580
OsAffx.14207.1.S1_at--493--891Chr04:23377624..23377648 (25 bp)
AGGCCTGTGCCGTATAGGTGCCAGC
LOC_Os04g39580
OsAffx.14207.1.S1_at--518--7291Chr04:23377630..23377654 (25 bp)
GTGCCGTATAGGTGCCAGCGCAATG
LOC_Os04g39580
OsAffx.14207.1.S1_at--739--7171Chr04:23377660..23377684 (25 bp)
GTCTGCTGCGTCTTGGGCAGCGAAA
LOC_Os04g39580
OsAffx.14207.1.S1_at--421--3391Chr04:23377677..23377701 (25 bp)
CAGCGAAAGAGGCCCGTGCCATGAT
LOC_Os04g39580
Target Sequence 
TGCGTGTGCGCGAAGCCGCCAACTGCGAAGCGGCGGCAGGGTTACCGGTTGCGCGGTGAGCGTACTACGGCCCGCCGCGA
CGAGGAGCAGACGAGCGCCGAGCGCGCGCGCGCGAGACACGGAGACCGACGTGCACGTAGAGCGATGGGCCTCGGCCGGA
CCCCCGCGATTCATCAAGCCCGATGCTGGGGGTCTCTGGGCGACGCGGGACAGGCCCGCCCGGTACGGCCTATGCCACGG
AAGAGGCCTGTGCCGTATAGGTGCCAGCGCAATGGGGCCGTCTGCTGCGTCTTGGGCAGCGAAAGAGGCCCGTGCCATGA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis