Browse Element(s) Details


Os.50644.2.S1_x_at

Description gb:AY341851.1
DB_XREF= gi:33519189
TID=Os.50644.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50644 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY10 mRNA, complete cds.
PROD=WRKY10
FL= gb:AY341851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g395707/11WRKY DNA binding domain containing protein, expressed
LOC_Os03g091101/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39560Os.12231.1.S1_a_at11/114+23334663..23339840expressed protein
LOC_Os04g39570Os.50644.2.S1_x_at7/114+23360738..23368089WRKY DNA binding domain containing protein, expressed
LOC_Os04g39580OsAffx.14207.1.S1_at11/114+23377363..23377743hypothetical protein
LOC_Os04g39590OsAffx.14208.1.S1_at11/114+23378994..23380162Fasciclin domain containing protein
LOC_Os04g39600Os.5963.1.S1_at11/114+23380441..23381606Fasciclin domain containing protein, expressed
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0010214biological_processseed coat development
GO:0005743cellular_componentmitochondrial inner membrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50644.2.S1_x_at--1071--8611Chr04:23361008..23361032 (25 bp)
TGGTGGTCCCCAAGGCGGAGGTGAA
LOC_Os04g39570
Os.50644.2.S1_x_at--32--4712Chr05:22058550..22058569 (20 bp)
GCGGCGCGGCGGTGTATCAGCAGGC
NONE
Os.50644.2.S1_x_at--765--391Chr04:23360924..23360948 (25 bp)
ATCAGCAGGCGATGAGCAGGGTGTC
LOC_Os04g39570
Os.50644.2.S1_x_at--786--5351Chr04:23360864..23360888 (25 bp)
GAAGAGCAGTTTTAGGAGCTTTTAT
LOC_Os04g39570
Os.50644.2.S1_x_at--617--8071Chr04:23360850..23360874 (25 bp)
GGAGCTTTTATATTCATATGCTTAG
LOC_Os04g39570
Os.50644.2.S1_x_at--477--6451Chr04:23360795..23360819 (25 bp)
GATAAGTATAACGATCAGTTCTTGT
LOC_Os04g39570
Os.50644.2.S1_x_at--58--6552Chr04:23360762..23360783 (22 bp)
GATTTTTGCAATTAGTGCTGCTGCT
LOC_Os04g39570
Os.50644.2.S1_x_at--630--5191NONE
GCAATTAGTGCTGCTGCTTAGACTA
NONE
Os.50644.2.S1_x_at--520--1131NONE
AGTGCTGCTGCTTAGACTATCGTTA
NONE
Os.50644.2.S1_x_at--441--4771NONE
GCTGCTGCTTAGACTATCGTTAAAT
NONE
Os.50644.2.S1_x_at--1091--4871NONE
GCTTAGACTATCGTTAAATTAGCTT
NONE
Target Sequence 
TGGTGGTCCCCAAGGCGGAGGTGAAGCAGGAGGCGATGCGGCCCGCCGCCGCCGTCGCCGGCGCGGGGCGCGGCGCGGCG
GTGTATCAGCAGGCGATGAGCAGGGTGTCGCTGGGGAATCAACTGTAGAGATAAATAATAAAAAAAGAAGAGCAGTTTTA
GGAGCTTTTATATTCATATGCTTAGGTTAATTAATTAATTAATTAATGTTACCATGATAAGTATAACGATCAGTTCTTGT
TCTTAGTGTTTGATTTTTGCAATTAGTGCTGCTGCTTAGACTATCGTTAAATTAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50644.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis