Browse Element(s) Details


Os.12231.1.S1_a_at

Description gb:AK120756.1
DB_XREF= gi:37990379
TID=Os.12231.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full insert sequence.
FL= gb:AK120756.1 gb:AK099564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3956011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39530NANA4+23316323..23318391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g39540Os.23802.1.A1_at10/114+23324866..23327760expressed protein
LOC_Os04g39560Os.12231.1.S1_a_at11/114+23334663..23339840expressed protein
LOC_Os04g39570Os.50644.2.S1_x_at7/114+23360738..23368089WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12231.1.S1_a_at--627--9431Chr04:23335290..23335314 (25 bp)
TCGGTCCCGAACACTGTGGCATCAA
LOC_Os04g39560
Os.12231.1.S1_a_at--363--371Chr04:23335270..23335294 (25 bp)
ATCAAGGCCATTTTACTGCCTTCCA
LOC_Os04g39560
Os.12231.1.S1_a_at--271--8051Chr04:23335222..23335246 (25 bp)
GGAGAGTGCTGTTGGACCCCTGCCT
LOC_Os04g39560
Os.12231.1.S1_a_at--985--3031Chr04:23335113..23335137 (25 bp)
AATCCATTCTATGTGCAATCTCCGG
LOC_Os04g39560
Os.12231.1.S1_a_at--265--9011Chr04:23335100..23335124 (25 bp)
TGCAATCTCCGGCTGGTTACATAAA
LOC_Os04g39560
Os.12231.1.S1_a_at--925--2371Chr04:23335078..23335102 (25 bp)
AAACCCATCGGTCTACTATTCGCAG
LOC_Os04g39560
Os.12231.1.S1_a_at--929--9911Chr04:23335049..23335073 (25 bp)
TACGGTGATGATTCCTCAGTAACTC
LOC_Os04g39560
Os.12231.1.S1_a_at--1067--7351Chr04:23334939..23334963 (25 bp)
GTGAACCTTCATAAGATGCCTGACT
LOC_Os04g39560
Os.12231.1.S1_a_at--727--6351Chr04:23334925..23334949 (25 bp)
GATGCCTGACTTTTTCATGAGGTTT
LOC_Os04g39560
Os.12231.1.S1_a_at--252--691Chr04:23334909..23334933 (25 bp)
ATGAGGTTTTTTCACATAGGTTGCC
LOC_Os04g39560
Os.12231.1.S1_a_at--1049--10691Chr04:23334889..23334913 (25 bp)
TTGCCTCTTTAGTTTTTCGTTTCAG
LOC_Os04g39560
Target Sequence 
TCGGTCCCGAACACTGTGGCATCAAGGCCATTTTACTGCCTTCCATCCCAAAACCAGCTTTTACCAAGGGAGAGTGCTGT
TGGACCCCTGCCTGTATTCACAAACATTAACCCNNAATTGTTNGTGTTAGCTCATCAAGTCAAGGAAACAACGCAGAAGT
AGCACATCCNTTACATGTCAAATCCATTCTATGTGCAATCTCCGGCTGGTTACATAAACCCATCGGTCTACTATTCGCAG
AATTTACGGTGATGATTCCTCAGTAACTCAAATGAAGAAGAGAACTGCAATTGGTCATCAATGCCAACGTGGGAATAATG
AGAGCTTTGTGATGAGTCTAAAATTCTGAGAGTAGTGAACCTTCATAAGATGCCTGACTTTTTCATGAGGTTTTTTCACA
TAGGTTGCCTCTTTAGTTTTTCGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12231.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis