Browse Element(s) Details


Os.23802.1.A1_at

Description gb:AK069769.1
DB_XREF= gi:32979793
TID=Os.23802.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027N05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027N05, full insert sequence.
FL= gb:AK069769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3954010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39489Os.7445.1.S1_at11/114+23293688..23303872amino acid transporter family protein, putative, expressed
LOC_Os04g39510OsAffx.26390.1.S1_at11/114+23305096..23306172hypothetical protein
LOC_Os04g39520OsAffx.4030.1.S1_at11/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39520OsAffx.6586.1.S1_at1/114+23308226..23313262Zinc finger, C2H2 type family protein
LOC_Os04g39530NANA4+23316323..23318391transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g39540Os.23802.1.A1_at10/114+23324866..23327760expressed protein
LOC_Os04g39560Os.12231.1.S1_a_at11/114+23334663..23339840expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23802.1.A1_at--100--8891Chr04:23325269..23325293 (25 bp)
TGAGGATGCAGAGCCGGACGCTCAA
LOC_Os04g39540
Os.23802.1.A1_at--321--8111Chr04:23325254..23325278 (25 bp)
GGACGCTCAAGATATGCCTCTTCGG
LOC_Os04g39540
Os.23802.1.A1_at--812--10611Chr04:23325165..23325189 (25 bp)
TTCGATGACGTTGTGCCGACGTGAT
LOC_Os04g39540
Os.23802.1.A1_at--400--731Chr04:23325117..23325141 (25 bp)
ATGATTGTGTTCTCCTAGCTTGTAA
LOC_Os04g39540
Os.23802.1.A1_at--103--6471Chr04:23325067..23325091 (25 bp)
GTTAGGTCTAATTTCGATACGGTTG
LOC_Os04g39540
Os.23802.1.A1_at--8--6491Chr04:23325052..23325076 (25 bp)
GATACGGTTGACTAGCTGATTGCAG
LOC_Os04g39540
Os.23802.1.A1_at--871--9971Chr04:23324965..23324989 (25 bp)
TAGCCATCAGTCCTGTCCATTATAG
LOC_Os04g39540
Os.23802.1.A1_at--499--4511Chr04:23324940..23324964 (25 bp)
GCCGAGCACGAGAACAGCAGTAAAA
LOC_Os04g39540
Os.23802.1.A1_at--618--2411Chr04:23324918..23324942 (25 bp)
AAAAATTTCCTTGGCTGACGATGAA
LOC_Os04g39540
Os.23802.1.A1_at--292--2431Chr04:23324895..23324919 (25 bp)
AAAACGGTCGAAACTGTAGCATGTC
LOC_Os04g39540
Os.23802.1.A1_at--338--2291Chr04:23324862..23324886 (25 bp)
AAATGACTCTTGGTCGGTCGGAAAT
NONE
Target Sequence 
TGAGGATGCAGAGCCGGACGCTCAAGATATGCCTCTTCGGCCTCCTCCAGCTCGTCCTNCTCTTCCTCTCCCTCAAGGCG
TTCTTCGCCCAGGTCTCCGACCCCTTCGATGACGTTGTGCCGACGTGATCGATTTGGTATTTCNAAGGCCTGATGATTGT
GTTCTCCTAGCTTGTAAATATGGTCACTAATTATGTGTGTTTGTTAGGTCTAATTTCGATACGGTTGACTAGCTGATTGC
AGGTTGTGATGTACAGCTGAATTACGAAAACTCNTGTNAAAAAAATGTCAGTTTGTGCATNAAACTAGCCATCAGTCCTG
TCCATTATAGGCCGAGCACGAGAACAGCAGTAAAAAATTTCCTTGGCTGACGATGAAAACGGTCGAAACTGTAGCATGTC
TATTCGAAAAATGACTCTTGGTCGGTCGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23802.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis