Browse Element(s) Details


OsAffx.26392.1.S1_at

Description tigr:9632.m03763
TID=OsAffx.26392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005212 At2g42260
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3967011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed
LOC_Os04g39650OsAffx.26391.1.S1_at11/114+23407634..23410685Leucine Rich Repeat family protein, expressed
LOC_Os04g39660Os.27136.1.S1_at11/114+23410961..23412867F-box domain containing protein, expressed
LOC_Os04g39670OsAffx.26392.1.S1_at11/114+23413318..23416172expressed protein
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26392.1.S1_at--522--5671Chr04:23413982..23414003 (22 bp)
GACATCACGGCGATTGCAAAGGCTA
LOC_Os04g39670
OsAffx.26392.1.S1_at--1121--5411Chr04:23415103..23415127 (25 bp)
GAAGCCGCTTAAGGATTGCTGCTGC
LOC_Os04g39670
OsAffx.26392.1.S1_at--941--4591Chr04:23415134..23415158 (25 bp)
GCGAAGCCAGACACCTGAGCAGAAT
LOC_Os04g39670
OsAffx.26392.1.S1_at--751--1451Chr04:23415154..23415178 (25 bp)
AGAATACTCCCCATTGCACTGAAGT
LOC_Os04g39670
OsAffx.26392.1.S1_at--1123--51Chr04:23415166..23415190 (25 bp)
ATTGCACTGAAGTTCGGGACTCCCT
LOC_Os04g39670
OsAffx.26392.1.S1_at--947--5711Chr04:23415183..23415207 (25 bp)
GACTCCCTTGATGTTGAACCTGGCA
LOC_Os04g39670
OsAffx.26392.1.S1_at--763--2531Chr04:23415215..23415239 (25 bp)
AACTCAAATTGTTGCGACCCCTGCA
LOC_Os04g39670
OsAffx.26392.1.S1_at--600--3791Chr04:23415275..23415299 (25 bp)
CTCGCCATCTGAAACATCACTTGTT
LOC_Os04g39670
OsAffx.26392.1.S1_at--230--2671Chr04:23415309..23415333 (25 bp)
AAGCCGATGGATCCAGTCCTTCTGG
LOC_Os04g39670
OsAffx.26392.1.S1_at--930--9471Chr04:23415621..23415645 (25 bp)
TCTGCTCGAGGACCTAGTTCTAGGA
LOC_Os04g39670
OsAffx.26392.1.S1_at--460--5271Chr04:23416061..23416085 (25 bp)
GAATGCACAATACCTGCTGCCAATA
LOC_Os04g39670
Target Sequence 
GACATCACGGCGATTGCAAAGGCTATTCAGAGAAGCCGCTTAAGGATTGCTGCTGCTCAGCAGCGAAGCCAGACACCTGA
GCAGAATACTCCCCATTGCACTGAAGTTCGGGACTCCCTTGATGTTGAACCTGGCATCAACTCAACTCAAATTGTTGCGA
CCCCTGCATCTAGCTTGGCCAAGGACAGTCTGAAGATTTTCTCCTCGCCATCTGAAACATCACTTGTTACCCCGTCCAAG
CCGATGGATCCAGTCCTTCTGGATGATATGGAGAAGAAACTGTCCAGCTCAATAGAGCAGATAGAGAAGATGGTGAGGAG
AAACCTGAAGAGAACTCCGAAGGCGGCGGCTGCTCAGCCTTCCAAGAGGGCCATCCAGAGGCGCACACTCATGCTTACCA
TTGCATGGTGCTCTGCTCGAGGACCTAGTTCTAGGATTAACAGCTGGAAGTGCCAGAATATTTTGAAGTATAGCAAGAAT
GCACAATACCTGCTGCCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis