Browse Element(s) Details


OsAffx.26391.1.S1_at

Description tigr:9632.m03761
TID=OsAffx.26391.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor protein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3965011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39610NANA4+23387527..23391924glycerophosphoryl diester phosphodiesterase 1 precursor, putative, expressed
LOC_Os04g39629Os.18684.1.S1_at11/114+23397289..23404774RNA recognition motif family protein, expressed
LOC_Os04g39650OsAffx.26391.1.S1_at11/114+23407634..23410685Leucine Rich Repeat family protein, expressed
LOC_Os04g39660Os.27136.1.S1_at11/114+23410961..23412867F-box domain containing protein, expressed
LOC_Os04g39670OsAffx.26392.1.S1_at11/114+23413318..23416172expressed protein
LOC_Os04g39680Os.56469.1.S1_at10/114+23421767..23424499C2 domain containing protein, expressed
LOC_Os04g39680OsAffx.30059.2.S1_x_at1/114+23421767..23424499C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26391.1.S1_at--968--1191Chr04:23409790..23409814 (25 bp)
AGTTACCGGATTTGGGATCGATCGT
LOC_Os04g39650
OsAffx.26391.1.S1_at--1123--2931Chr04:23409827..23409851 (25 bp)
AAGGCGTATCGATCTTCGTTGGCTT
LOC_Os04g39650
OsAffx.26391.1.S1_at--702--431Chr04:23409838..23409862 (25 bp)
ATCTTCGTTGGCTTCTGATCTGAAT
LOC_Os04g39650
OsAffx.26391.1.S1_at--381--5211Chr04:23409859..23409883 (25 bp)
GAATTACAGCTGCTACATCGCTCCA
LOC_Os04g39650
OsAffx.26391.1.S1_at--669--3791Chr04:23410177..23410198 (22 bp)
CTCCAGTTATACATTTCACCCAGAA
LOC_Os04g39650
OsAffx.26391.1.S1_at--140--1011Chr04:23410212..23410236 (25 bp)
AGGATAGCTATTTCCACAGCAGAAT
LOC_Os04g39650
OsAffx.26391.1.S1_at--221--10331Chr04:23410248..23410272 (25 bp)
TTTCATAAAACTCTGGCTCTCTGCG
LOC_Os04g39650
OsAffx.26391.1.S1_at--499--3831Chr04:23410268..23410292 (25 bp)
CTGCGCACTTATCCCACTGAAGTTG
LOC_Os04g39650
OsAffx.26391.1.S1_at--767--8991Chr04:23410285..23410309 (25 bp)
TGAAGTTGTTTGCTCTTTTGCTGAA
LOC_Os04g39650
OsAffx.26391.1.S1_at--594--2591Chr04:23410337..23410361 (25 bp)
AACGCACCTCATGGACGTGTACAGC
LOC_Os04g39650
OsAffx.26391.1.S1_at--674--9031Chr04:23410560..23410584 (25 bp)
TGCACCTCGGTGATGCCTGACCAGA
LOC_Os04g39650
Target Sequence 
AGTTACCGGATTTGGGATCGATCGTGTCGTTGGCGAGAAGGCGTATCGATCTTCGTTGGCTTCTGATCTGAATTACAGCT
GCTACATCGCTCCAGTTATACATTTCACCCAGAAGCAGAATTTCATTAGGATAGCTATTTCCACAGCAGAATTGCACTCA
AGATTTCATAAAACTCTGGCTCTCTGCGCACTTATCCCACTGAAGTTGTTTGCTCTTTTGCTGAAACCAGAGGTAAACTG
CACCAAGAAACCAACGCACCTCATGGACGTGTACAGCTTCGGCGTCATCCTCCTGGAGCTGATCACCGGGAAGCCGGCGG
GGCAGCCGGCGTCGGACGACTCGGTGGACATCGTCCGGTGGGTGCGGCGGCGGGTCAACGTGGCCGGCGGCGCGGCGCAG
ATACTCGACCCCGCCGCCGCCGTCTCCCACGCGGCGCAGCAGGGGATGCAGGCGGCGCTGGAGCTCGCCCTGCTCTGCAC
CTCGGTGATGCCTGACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26391.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis