Browse Element(s) Details


Os.12785.1.S1_at

Description gb:AK066340.1
DB_XREF= gi:32976358
TID=Os.12785.1
CNT=49
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.12785 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L27 (OSJNBa0027P10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013064A22, full insert sequence.
FL= gb:AK066340.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4147011/1160S ribosomal protein L27, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41430Os.46852.1.S1_at11/1110+21938911..21940946Cyclin, N-terminal domain containing protein, expressed
LOC_Os10g41440Os.2720.1.S1_at11/1110+21944875..21948320KH domain-containing protein, putative, expressed
LOC_Os10g41450Os.52788.1.S1_at10/1110+21948992..21951672mediator complex subunit SOH1, putative, expressed
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12785.1.S1_at--1136--9311Chr10:21959317..21959341 (25 bp)
TCGCCACCAGGGACAAGAAGGTCGC
LOC_Os10g41470
Os.12785.1.S1_at--761--2691Chr10:21959222..21959246 (25 bp)
AAGCTCCGCTTCTGAGCTCTCTCCT
LOC_Os10g41470
Os.12785.1.S1_at--255--2711Chr10:21959130..21959154 (25 bp)
AAGCTTTTCGCTTTCTGAGTAGCAG
LOC_Os10g41470
Os.12785.1.S1_at--715--4891Chr10:21959128..21959152 (25 bp)
GCTTTTCGCTTTCTGAGTAGCAGCC
LOC_Os10g41470
Os.12785.1.S1_at--309--10391Chr10:21959126..21959150 (25 bp)
TTTTCGCTTTCTGAGTAGCAGCCAA
LOC_Os10g41470
Os.12785.1.S1_at--1107--10631Chr10:21959124..21959148 (25 bp)
TTCGCTTTCTGAGTAGCAGCCAATG
LOC_Os10g41470
Os.12785.1.S1_at--1136--4871Chr10:21959121..21959145 (25 bp)
GCTTTCTGAGTAGCAGCCAATGAAT
LOC_Os10g41470
Os.12785.1.S1_at--649--3851Chr10:21959116..21959140 (25 bp)
CTGAGTAGCAGCCAATGAATGGTTT
LOC_Os10g41470
Os.12785.1.S1_at--997--6951Chr10:21959112..21959136 (25 bp)
GTAGCAGCCAATGAATGGTTTTGGA
LOC_Os10g41470
Os.12785.1.S1_at--637--7511Chr10:21959028..21959052 (25 bp)
GTGGATGTTTAGTAGTATGGATCTA
LOC_Os10g41470
Os.12785.1.S1_at--195--6951Chr10:21959017..21959041 (25 bp)
GTAGTATGGATCTATTAAAGAAGCA
LOC_Os10g41470
Target Sequence 
TCGCCACCAGGGACAAGAAGGTCGCCGCCTGCAAGTCCGCCAAGGCGCGCCTCGAGGACCGCTTCAAGACCGGCAAGAAC
AGGTGGTTCTTCACCAAGCTCCGCTTCTGAGCTCTCTCCTGCGGCGGCGGCGGCGGCGATGGGATGGTACTGGTGCACGG
CCATCTCATCCTTTTTNCTCTTTTTCTAAAGCTTTTCGCTTTCTGAGTAGCAGCCAATGAATGGTTTTGGATTTTCTAAA
TTAATCTCAATCACCCTGATGTAATGGTACTACTGCCTGCTTGTGTGGGTGTGGATGTTTAGTAGTATGGATCTATTAAA
GAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis