Browse Element(s) Details


Os.11223.1.S1_at

Description gb:AK111555.1
DB_XREF= gi:37988218
TID=Os.11223.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative casein kinase II beta subunit (OSJNBa0027P10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051E04, full insert sequence.
FL= gb:AK111555.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4152011/11Casein kinase II beta-4 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41460Os.22666.1.S1_at11/1110+21954678..21956227expressed protein
LOC_Os10g41470Os.12785.1.S1_at11/1110+21958726..2195969760S ribosomal protein L27, putative, expressed
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41550Os.46618.1.S1_at11/1110+21994509..21997928Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g41560Os.46617.1.S1_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed
LOC_Os10g41560Os.31379.1.S1_s_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005956cellular_componentprotein kinase CK2 complex
GO:0008134molecular_functiontranscription factor binding
GO:0008605molecular_functionprotein kinase CK2 regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11223.1.S1_at--926--7831Chr10:21983126..21983150 (25 bp)
GGTATACTGTTGTGGCCAACCCTGT
LOC_Os10g41520
Os.11223.1.S1_at--228--8731Chr10:21983148..21983172 (25 bp)
TGTCTTCCTGCAGGGCAATCAGATA
LOC_Os10g41520
Os.11223.1.S1_at--456--8931Chr10:21983775..21983799 (25 bp)
TGACGGAGCGTACTTTGGGACAACA
LOC_Os10g41520
Os.11223.1.S1_at--879--2651Chr10:21983845..21983869 (25 bp)
AAGCCATCTCAGCAGTATGTTCCAA
LOC_Os10g41520
Os.11223.1.S1_at--1002--2371Chr10:21983906..21983930 (25 bp)
AAACTTGTACGGTAAGCTGCTGCTT
LOC_Os10g41520
Os.11223.1.S1_at--862--4771Chr10:21983921..21983945 (25 bp)
GCTGCTGCTTGTTTTTACCTAGTTT
LOC_Os10g41520
Os.11223.1.S1_at--304--4931Chr10:21984005..21984029 (25 bp)
GCTTGAATCTCGCTGTAATTGCCGA
LOC_Os10g41520
Os.11223.1.S1_at--1054--71Chr10:21984022..21984046 (25 bp)
ATTGCCGAGCAACTGTATCTGTTTT
LOC_Os10g41520
Os.11223.1.S1_at--153--7011Chr10:21984048..21984072 (25 bp)
GTACTGTTAATTCTGTGATCCTAGG
LOC_Os10g41520
Os.11223.1.S1_at--409--6371Chr10:21984064..21984088 (25 bp)
GATCCTAGGTTGTCTCACTGTATCA
LOC_Os10g41520
Os.11223.1.S1_at--223--6771Chr10:21984095..21984119 (25 bp)
GTTAATCCGCATGCTTTTCGGGTTA
LOC_Os10g41520
Target Sequence 
GGTATACTGTTGTGGCCAACCCTGTCTTCCTGCAGGGCAATCAGATATTCCTAGGTCTAGCACAGTGAAGATATACTGTC
CAAAATGTGAAGATTTACATTATCCAAGATCCAAGTACCAAGGCAACATTGACGGAGCGTACTTTGGGACAACATTCCCA
CATCTCTTCCTGATGACATATCCACACTTGAAGCCACAAAAGCCATCTCAGCAGTATGTTCCAAAAGTTTTTGGCTTCAA
ACTTCACAAGCAGTCATGACAAACTTGTACGGTAAGCTGCTGCTTGTTTTTACCTAGTTTTTAGGGAGAGAACATTGTGG
CCCGAAATTATTGCGGTCTGTTGATGTGAGAACATGTGAGCTTGAATCTCGCTGTAATTGCCGAGCAACTGTATCTGTTT
TTGTACTGTTAATTCTGTGATCCTAGGTTGTCTCACTGTATCAAATTATGTTAATCCGCATGCTTTTCGGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis