Browse Element(s) Details


Os.31379.1.S1_s_at

Description gb:AK107429.1
DB_XREF= gi:32992638
TID=Os.31379.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.31379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-128-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A05, full insert sequence.
FL= gb:AK107429.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4156011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41550Os.46618.1.S1_at11/1110+21994509..21997928Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g41560Os.46617.1.S1_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed
LOC_Os10g41560Os.31379.1.S1_s_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31379.1.S1_s_at--562--5711Chr10:22003843..22003867 (25 bp)
GACTCTGCCTTCTGTGTTAGTGAGA
LOC_Os10g41560
Os.31379.1.S1_s_at--383--51Chr10:22003786..22003810 (25 bp)
ATTGTATGGGCTTCGTCAGATGCCT
LOC_Os10g41560
Os.31379.1.S1_s_at--1121--4891Chr10:22003777..22003801 (25 bp)
GCTTCGTCAGATGCCTACCCATGGG
LOC_Os10g41560
Os.31379.1.S1_s_at--588--631Chr10:22003751..22003775 (25 bp)
ATGCTATGTTTACCAAGTTCAGAGC
LOC_Os10g41560
Os.31379.1.S1_s_at--1052--2811Chr10:22003737..22003761 (25 bp)
AAGTTCAGAGCAAGTCACTGCAATT
LOC_Os10g41560
Os.31379.1.S1_s_at--813--5231Chr10:22003690..22003714 (25 bp)
GAAGAGTGTGAGCTAAAACCTAAGA
LOC_Os10g41560
Os.31379.1.S1_s_at--201--7871Chr10:22003664..22003688 (25 bp)
GGTATCAGAGTCTTATGCCCAGCAA
LOC_Os10g41560
Os.31379.1.S1_s_at--730--4551Chr10:22003648..22003672 (25 bp)
GCCCAGCAAGCATTGGAGAGGTCCT
LOC_Os10g41560
Os.31379.1.S1_s_at--556--1331Chr10:22003632..22003656 (25 bp)
AGAGGTCCTGAGATGAGAGGCAAAC
LOC_Os10g41560
Os.31379.1.S1_s_at--755--8131Chr10:22003515..22003539 (25 bp)
GGACAGATCCAGCATTTTCGTGCAA
LOC_Os10g41560
Os.31379.1.S1_s_at--385--6831Chr10:22003472..22003496 (25 bp)
GTTTCAGGTTTACATTTGCTCCCAT
LOC_Os10g41560
Target Sequence 
GACTCTGCCTTCTGTGTTAGTGAGAGATTTGCGGAAGATGCNAGTATNCGAGGAGCAAATTGTATGGGCTTCGTCAGATG
CCTACCCATGGGNATGCTATGTTTACCAAGTTCAGAGCAAGTCACTGCAATTCATGGCGATNCGGCGGCCAAAAGAAGAG
TGTGAGCTAAAACCTAAGAAGGTATCAGAGTCTTATGCCCAGCAAGCATTGGAGAGGTCCTGAGATGAGAGGCAAACATN
CCATGCATTAGTGTAGNCACTAGACACATGTAAAGTGATGTACATAACATAGGTGNGTATACATGCGTGTAANAAAGGAG
TCAGGANCAGGACAGATCCAGCATTTTCGTGCAANATGTGTCCGAAATGAGAGTTTCAGGTTTACATTTGCTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31379.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis