Browse Element(s) Details


Os.50294.1.S1_at

Description gb:AK120574.1
DB_XREF= gi:37990197
TID=Os.50294.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134L11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134L11, full insert sequence.
FL= gb:AK120574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4153411/11ICE-like protease p20 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41550Os.46618.1.S1_at11/1110+21994509..21997928Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g41560Os.46617.1.S1_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed
LOC_Os10g41560Os.31379.1.S1_s_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50294.1.S1_at--503--3891Chr10:21989968..21989992 (25 bp)
CTGTGAAGGCTGCACAAAAGCGCAT
LOC_Os10g41534
Os.50294.1.S1_at--279--2951Chr10:21989973..21989997 (25 bp)
AAGGCTGCACAAAAGCGCATGCCAA
LOC_Os10g41534
Os.50294.1.S1_at--808--2991Chr10:21990006..21990030 (25 bp)
AATGATCTACCGTTGTCAGTAGTGT
LOC_Os10g41534
Os.50294.1.S1_at--544--3451Chr10:21990022..21990046 (25 bp)
CAGTAGTGTGAGAAGGAAAGCCAAC
LOC_Os10g41534
Os.50294.1.S1_at--1148--9771Chr10:21990048..21990072 (25 bp)
TAAGGTTGGCACGAAGCTGCTTCGC
LOC_Os10g41534
Os.50294.1.S1_at--448--1851Chr10:21990058..21990082 (25 bp)
ACGAAGCTGCTTCGCGATGTCATCG
LOC_Os10g41534
Os.50294.1.S1_at--1119--4051Chr10:21990072..21990096 (25 bp)
CGATGTCATCGCGTTGTTACCAATT
LOC_Os10g41534
Os.50294.1.S1_at--1003--511Chr10:21990079..21990103 (25 bp)
ATCGCGTTGTTACCAATTCGCCCGA
LOC_Os10g41534
Os.50294.1.S1_at--892--6631Chr10:21990084..21990108 (25 bp)
GTTGTTACCAATTCGCCCGACACAA
LOC_Os10g41534
Os.50294.1.S1_at--143--8671Chr10:21990232..21990256 (25 bp)
TGTGGTGTCTTTTGCGACGCAGCAG
LOC_Os10g41534
Os.50294.1.S1_at--882--10391Chr10:21990241..21990265 (25 bp)
TTTTGCGACGCAGCAGAACTCCTGC
LOC_Os10g41534
Target Sequence 
CTGTGAAGGCTGCACAAAAGCGCATGCCAAATAATGGCAATGATCTACCGTTGTCAGTAGTGTGAGAAGGAAAGCCAACA
TAAGGTTGGCACGAAGCTGCTTCGCGATGTCATCGCGTTGTTACCAATTCGCCCGACACAACCTTCCGCTTCCCTACAGG
GGGAAGTTGCTCCACCCCATCGGGCCGTGGCGATACCCTGAGTGACTGCCGTTGCAGCAGAGCTTCGGAACCAGAGTTTT
CCGCCATTCCCTCCATACATCTTTTGTGGTGTCTTTTGCGACGCAGCAGAACTCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis