Browse Element(s) Details


Os.12787.1.S1_at

Description gb:AK104034.1
DB_XREF= gi:32989243
TID=Os.12787.1
CNT=44
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.12787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0008A05.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G07, full insert sequence.
FL= gb:AK071458.1 gb:AK070152.1 gb:AK104034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1834011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18294Os.45173.1.S1_x_at3/1110+8964379..8971113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18310NANA10+8972985..8973530hypothetical protein
LOC_Os10g18330OsAffx.18286.1.S1_at11/1110+8980933..8981682hypothetical protein
LOC_Os10g18340Os.12787.1.S1_at11/1110+8984080..8984965expressed protein
LOC_Os10g18350NANA10+8987788..8991340hypothetical protein
LOC_Os10g18360Os.1709.1.S1_x_at11/1110+8991814..8996558retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18364Os.11716.1.S1_at11/1110+8999272..9005164expressed protein
LOC_Os10g18370Os.7711.1.S1_at11/1110+9006514..9007842Uncharacterized ACR, COG1678 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12787.1.S1_at--1091--1831Chr10:8984405..8984429 (25 bp)
ACGACAAGCCGGTCGGGCAGTACAT
LOC_Os10g18340
Os.12787.1.S1_at--66--1671Chr10:8984411..8984435 (25 bp)
AGCCGGTCGGGCAGTACATCGACAA
LOC_Os10g18340
Os.12787.1.S1_at--224--4471Chr10:8984550..8984574 (25 bp)
GCCTGCGCCGGCTGAGAAGGAGGAA
LOC_Os10g18340
Os.12787.1.S1_at--439--10511Chr10:8984701..8984725 (25 bp)
TTCAAGATGGCGCAGGGTTTCATGA
LOC_Os10g18340
Os.12787.1.S1_at--166--7691Chr10:8984715..8984739 (25 bp)
GGGTTTCATGAAGTAGGAGAGCTCT
LOC_Os10g18340
Os.12787.1.S1_at--703--4811Chr10:8984735..8984759 (25 bp)
GCTCTTTGGCTGGATATATAGCTGC
LOC_Os10g18340
Os.12787.1.S1_at--929--10791Chr10:8984768..8984792 (25 bp)
TTGTCTCTGGATTGTGGCTCTGCTT
LOC_Os10g18340
Os.12787.1.S1_at--769--9511Chr10:8984771..8984795 (25 bp)
TCTCTGGATTGTGGCTCTGCTTTAA
LOC_Os10g18340
Os.12787.1.S1_at--574--6291Chr10:8984814..8984838 (25 bp)
GATGATCTGTATGATGTTTTGTAAA
LOC_Os10g18340
Os.12787.1.S1_at--1117--6791Chr10:8984829..8984853 (25 bp)
GTTTTGTAAATGTCTCTCAGCTCTG
LOC_Os10g18340
Os.12787.1.S1_at--148--10811Chr10:8984832..8984856 (25 bp)
TTGTAAATGTCTCTCAGCTCTGTTG
LOC_Os10g18340
Target Sequence 
ACGACAAGCCGGTCGGGCAGTACATCGACAAGGCGGAGGGGTACCTCAAGGACTTCAGCTCCGGCAGTGGCGGCGCCGCA
CCGCCACCGCCGGCAGCCGGAGACGCCGCAGCGCCGAAGCCAGCGGCGGAGGAGCCGCCCAAGGAGCCTGCGCCGGCTGA
GAAGGAGGAAGGCAAGCCACCGTCGTCGTCGGAAGGGTTCGGTCTCGACGACGTCATGAAGGGGGCCGAGTCGCTGATGG
AGAAGAAGGGCGGCGGGGAGGAGAGCGCCGGCAGCGGCGGCGCCGCCGGTGGGCTGTTCAAGATGGCGCAGGGTTTCATG
AAGTAGGAGAGCTCTTTGGCTGGATATATAGCTGCATGCATGCTTGTCTCTGGATTGTGGCTCTGCTTTAATTTGCTTGT
TAATTAACTGATGATCTGTATGATGTTTTGTAAATGTCTCTCAGCTCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis