Browse Element(s) Details


Os.12810.1.S1_at

Description gb:AK066179.1
DB_XREF= gi:32976197
TID=Os.12810.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0509B06.15 (P0509B06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057C04, full insert sequence.
FL= gb:AK066179.1 gb:AK062062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein
LOC_Os01g08370Os.29008.1.S1_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.1.S1_x_at11/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08370Os.29008.2.S1_at7/111+4103630..4105343symbiosis-related disease resistance protein, putative, expressed
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12810.1.S1_at--116--8891Chr01:4122816..4122840 (25 bp)
TGAGTTTGAAAAATCCCCTTGTTCG
LOC_Os01g08410
Os.12810.1.S1_at--1033--6871Chr01:4122872..4122896 (25 bp)
GTATTTATGACCTTTGAGCGCCTTT
LOC_Os01g08410
Os.12810.1.S1_at--965--5871Chr01:4122887..4122911 (25 bp)
GAGCGCCTTTCTGAGATTCATTTCG
LOC_Os01g08410
Os.12810.1.S1_at--30--10611Chr01:4122908..4122932 (25 bp)
TTCGAATTCTTGAAGGCCTTTCTGG
LOC_Os01g08410
Os.12810.1.S1_at--69--4431Chr01:4122923..4122947 (25 bp)
GCCTTTCTGGTCTCAAAACGGTCAT
LOC_Os01g08410
Os.12810.1.S1_at--744--8771Chr01:4122955..4122979 (25 bp)
TGTTTTGAATTGTTGACCCGGTGGA
LOC_Os01g08410
Os.12810.1.S1_at--1001--7571Chr01:4123005..4123029 (25 bp)
GGGCTAATTGGGTACTCTCGTTCTC
LOC_Os01g08410
Os.12810.1.S1_at--422--9511Chr01:4123020..4123044 (25 bp)
TCTCGTTCTCTTTTGTGCTGTGGCT
LOC_Os01g08410
Os.12810.1.S1_at--306--7511Chr01:4123039..4123063 (25 bp)
GTGGCTTGCTGTGTCGAAATTGGTC
LOC_Os01g08410
Os.12810.1.S1_at--232--3451Chr01:4123066..4123090 (25 bp)
CAGTTATTGTTCTTACGTTGTCATA
LOC_Os01g08410
Os.12810.1.S1_at--362--7131Chr01:4123085..4123109 (25 bp)
GTCATATCTTTTGTTCCTTACTTTA
LOC_Os01g08410
Target Sequence 
TGAGTTTGAAAAATCCCCTTGTTCGTTTTTGGACTCACAATAAACTTTTTTGAGTTGTATTTATGACCTTTGAGCGCCTT
TCTGAGATTCATTTCGAATTCTTGAAGGCCTTTCTGGTCTCAAAACGGTCATGTAATTGTGTTTTGAATTGTTGACCCGG
TGGAACTTAATGGACGGCATGGCCAGTGGGGGCTAATTGGGTACTCTCGTTCTCTTTTGTGCTGTGGCTTGCTGTGTCGA
AATTGGTCGACAGTTATTGTTCTTACGTTGTCATATCTTTTGTTCCTTACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12810.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis