Browse Element(s) Details


Os.980.1.S1_a_at

Description gb:AK063507.1
DB_XREF= gi:32973525
TID=Os.980.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.980 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406H10.14 (P0406H10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F07, full insert sequence.
FL= gb:AK063507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0842010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08380OsAffx.9719.1.S1_x_at11/111+4107492..4108805Transferase family protein, expressed
LOC_Os01g08390OsAffx.10964.1.S1_at11/111+4113253..4113745hypothetical protein
LOC_Os01g08400Os.31960.1.S1_at11/111+4114843..4119183Syntaxin 32, putative, expressed
LOC_Os01g08410Os.12810.2.S1_x_at11/111+4120222..4123159expressed protein
LOC_Os01g08410Os.12810.1.S1_at11/111+4120222..4123159expressed protein
LOC_Os01g08420Os.980.1.S1_a_at10/111+4130505..4137434expressed protein
LOC_Os01g08430Os.17699.2.S1_x_at11/111+4140153..4147215expressed protein
LOC_Os01g08430Os.17699.1.S1_at11/111+4140153..4147215expressed protein
LOC_Os01g08440Os.8045.1.S1_at11/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08440OsAffx.9021.1.S1_x_at1/111+4149879..4151471Indole-3-acetate beta-glucosyltransferase, putative, expressed
LOC_Os01g08450Os.7869.1.S1_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450Os.7869.1.S1_x_at11/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed
LOC_Os01g08450OsAffx.24709.1.S1_x_at3/111+4157347..4161166GTP-binding protein YPTM2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.980.1.S1_a_at--986--5151Chr01:4136733..4136757 (25 bp)
GAATTTGGTCAAGCACGGTGGCGAC
LOC_Os01g08420
Os.980.1.S1_a_at--902--2711Chr01:4136743..4136767 (25 bp)
AAGCACGGTGGCGACTGGTTTATGC
LOC_Os01g08420
Os.980.1.S1_a_at--1012--6571Chr01:4136774..4136798 (25 bp)
GATTCCGAGTTTACTATCTGTAGAT
LOC_Os01g08420
Os.980.1.S1_a_at--1155--10151Chr01:4136788..4136812 (25 bp)
TATCTGTAGATCCAACGGTTGACCC
LOC_Os01g08420
Os.980.1.S1_a_at--219--7911Chr01:4136804..4136828 (25 bp)
GGTTGACCCACTTAAATCGCTGGCA
LOC_Os01g08420
Os.980.1.S1_a_at--114--531Chr01:4136819..4136843 (25 bp)
ATCGCTGGCAAACAATATATCTTTT
LOC_Os01g08420
Os.980.1.S1_a_at--737--9551Chr01:4136838..4136862 (25 bp)
TCTTTTGCTACTGAGGTCGAAGTGC
LOC_Os01g08420
Os.980.1.S1_a_at--946--3231Chr01:4136862..4136883 (22 bp)
CAACTTGGAAAACGCCTTCAGGCCT
LOC_Os01g08420
Os.980.1.S1_a_at--1065--10531NONE
TTCAGGCCTCTGTTGTCAGGCAGAT
NONE
Os.980.1.S1_a_at--50--5031Chr01:4137029..4137053 (25 bp)
GCAGTGGTCACTCATATATCAGCTA
LOC_Os01g08420
Os.980.1.S1_a_at--1092--9791Chr01:4137052..4137076 (25 bp)
TAACCAGCAGGCTCCGTGTTCTCTT
LOC_Os01g08420
Target Sequence 
GAATTTGGTCAAGCACGGTGGCGACTGGTTTATGCNCCGCAGATTCCGAGTTTACTATCTGTAGATCCAACGGTTGACCC
ACTTAAATCGCTGGCAAACAATATATCTTTTGCTACTGAGGTCGAAGTGCAACTTGGAAAACGCCTTCAGGCCTCTGTTG
TCAGGCAGATGAAAGATTCAGAAATGGCAATGCAGTGGTCACTCATATATCAGCTAACCAGCAGGCTCCGTGTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.980.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis